Xanthomonas hortorum: XJ27_05675
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Entry
XJ27_05675 CDS
T05082
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
xhr
Xanthomonas hortorum
Pathway
xhr00040
Pentose and glucuronate interconversions
xhr01100
Metabolic pathways
xhr02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
xhr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
XJ27_05675
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
XJ27_05675
Enzymes [BR:
xhr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
XJ27_05675
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
ASW45522
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Position
complement(1304957..1306018)
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AA seq
353 aa
AA seq
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MIIKTLNGALALALSACAASAIAGQVGYGAATTGGGNKTPVNVATFEAMQAAIDSYSGSG
GLVLNYTGKFDFSTIKDVCAQWKLPAKTVQIKNKSDVTIKGANGSAANFGVWVVGNANNI
IIQNMTIGLLQGGEAADSISLEGNSSGSPSKIWVDHNTVFASLTKCSGAGDASFDGGIDM
KKGVHHVTVSYNHVYNYQKVALNGFSDSDTKNSAARTTYHHNRFENVESRVPLQRRGLSH
IYNNYFNNVTTSGINVRMGGVAKIESNYFENIKNPVTSRDSSEIGYWDLINNYVGSGITW
GTPDGSKPYANATNWITTKVFPEPLGYTYSITPAAQVKAKVIATAGAGKNLAE
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgatcatcaagacactcaatggcgcgctcgcgcttgcactgtccgcttgcgccgcgagt
gccatcgccggccaggtcgggtacggtgccgctaccaccggcggcggcaacaagaccccg
gtcaacgtcgccaccttcgaagcgatgcaggccgccattgacagctattccggcagtggc
gggctggtgctcaattacaccggcaagttcgacttcagcaccatcaaggacgtctgcgcg
cagtggaagctgccggccaagaccgtgcagatcaagaacaagagcgatgtcaccatcaag
ggcgcgaatggctcggcggccaacttcggtgtgtgggtggtgggcaacgccaacaacatc
atcatccagaacatgaccatcggcttgctgcaaggcggcgaagctgcggattcgatttcg
ttggaaggcaattccagcggctcgccgtccaaaatctgggtcgatcacaacaccgtgttc
gcctcgttgaccaagtgctccggtgccggcgatgcctccttcgatggcggcatcgacatg
aagaagggcgtgcaccacgtcaccgtgtcctacaaccacgtctacaactatcaaaaggtc
gcgctcaatggattcagcgacagcgacaccaagaactcggccgcgcgcaccacctatcac
cacaaccgcttcgagaatgtcgagtcgcgcgtgccgctgcagcggcgcgggctgagccat
atctacaacaactacttcaacaacgtcaccacctccggcatcaacgtgcgcatgggcggc
gtggcgaagatcgaatccaactacttcgagaacatcaagaacccggtgacctcgcgcgac
agcagcgagatcggctactgggacctgatcaacaactacgttggcagcggcatcacctgg
ggcacgcctgatggcagcaagccctacgccaacgccaccaactggatcaccaccaaggtg
ttcccggagccgctgggctacacctacagcatcaccccggccgcgcaggtcaaggccaag
gtgatcgctactgcgggtgccggcaagaacctggcggagtga
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