Xanthomonas hortorum: XJ27_05940
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Entry
XJ27_05940 CDS
T05082
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
xhr
Xanthomonas hortorum
Brite
KEGG Orthology (KO) [BR:
xhr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xhr03016
]
XJ27_05940
Enzymes [BR:
xhr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
XJ27_05940
Transfer RNA biogenesis [BR:
xhr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
XJ27_05940
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
ASW45572
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All DBs
Position
1367502..1368596
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AA seq
364 aa
AA seq
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MPHWITHPSELTQRLHAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGM
NAALGEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQKLV
QEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDELSRRLTEQDRLGWLAED
AERLLATVEHDDGERWPHVSLRTAQFLEPAAQRRLLRLLRWRDLQARQSDRPRSWILDNE
LASQLARFPPDDLDALLRQFDKFPKAPRKLAAAVWDALNTPLPDEDHAPLAQAATDGNKA
VLKRLQDAVAQRSRELGLPDGILASRRHLESLIEQHSWPAPLGQWRREVLEAQVLPLLDD
ATAR
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
gtgccccattggatcacccacccctccgagctgacgcaacgcctgcacgcagcgcgtccg
tcccgcattggcctggacaccgaattcattcgcgaacgcacctactggccgcaactggcg
ctggtgcagatggccatcggcgaggagatcctgctgatcgacccgctgattccgggcatg
aacgcggcgcttggggaatggttgaccgccaccgatatcgtcaaggtgatgcatagcgcc
agcgaagatctggtcaccttcaaatgcgcgtgcggggtgttgccgcggccgttgttcgat
acccagatcgctgccgcgctggccggcgtgggcggtggcatgggctatcagaagctggtg
caggaagtgaccggcaccttgctgaccaagggcgagacgcgctcggactggatgcgccgt
ccgctctcgcccgcgcagctggaatacgccgccgacgatgtgcgctatctgtttgcgatc
catgacgaactcagccgccgtctgaccgagcaggaccgcctgggctggctggccgaagat
gccgagcgcctgctcgccacggtggagcacgacgatggcgagcgttggccgcatgtgagc
ctgcgcaccgcgcaatttttggaacctgccgcgcagcgtcggttgctgcggctgttgcgc
tggcgcgatctgcaggcgcgtcagagcgaccgcccacgcagctggatcctggacaacgaa
ctggccagccagctggcacgttttccgcccgacgatctggatgcactgctgcgccagttc
gacaaattccccaaggcaccgcgcaaactcgccgccgcagtgtgggacgcgctcaacaca
ccgctgccggacgaggaccatgcgccgctggcgcaggccgccaccgacggcaacaaggcc
gtgctcaagcgcttgcaggatgcggtggcgcagcgtagccgcgaactgggcctgccggac
ggcatcctggcctcacgccggcacctggagagcctgatcgaacaacacagctggcctgcc
ccgctgggccaatggcgccgcgaggtgctggaggcgcaagtgctgccgctgctggatgac
gctaccgcgcggtaa
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