Xanthomonas hortorum: XJ27_07980
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Entry
XJ27_07980 CDS
T05082
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
xhr
Xanthomonas hortorum
Pathway
xhr03030
DNA replication
xhr03430
Mismatch repair
xhr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XJ27_07980
03430 Mismatch repair
XJ27_07980
03440 Homologous recombination
XJ27_07980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xhr03032
]
XJ27_07980
03400 DNA repair and recombination proteins [BR:
xhr03400
]
XJ27_07980
Enzymes [BR:
xhr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
XJ27_07980
DNA replication proteins [BR:
xhr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
XJ27_07980
DNA repair and recombination proteins [BR:
xhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
XJ27_07980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ASW45908
LinkDB
All DBs
Position
1855364..1858954
Genome browser
AA seq
1196 aa
AA seq
DB search
MSTSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNN
LFALVKFYKAAEGVGIKPIAGADVMIATPDMTPWRMTLLCRDREGYLSLSRLLTRAWMEG
HRPEGGVAIHPEWLQSGHVNLFALAGRDSLAGRLFGEGRADLAEQQLADWQRVFGDGLHL
ELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEARVCISSGRVLDDP
KRPREYSDQQYLKSADEMAALFADVPDAIDNTHALAQRCNIEMRLGTYFLPAYPVPEDET
LDSWIRSQARDGLAARLEKSPIASGKTRQDYVDRLEFELDTIIKMGFPGYFLIVADFIQW
GKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMDR
RDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLVDSVAKLIPNILGIT
LKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTRNAGKHAGGVVIAPEPLS
EFCPLFAEHDEGGRGKNQVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINVRHARA
GIDPVDITTLPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLKDARPDRFEDLIALVSLY
RPGPMDLIPDFNARKHGQQEIIYPDPRTEAILKDTYGIMVYQEQVMQMAQIVGDYSLGGA
DLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAHKADEIFDLMEKFAGYGFNKSHAAAYA
LVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLGLTVKPPRVNESAYMFEA
ATPDTIQYGLGAIKGVGQGACEAIIEERQRGGPYTTLLDFCTRVGTAKLNRRTLEAMVNA
GAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPDPSAPALRLDLPESKEWP
LGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLGALEKILASQQRGGGGGGGDGEKR
AWRPEVSAILAGLVVGVRRKGDSQVFVQLEDGRGRVECSAFSDAMAEFGHLLTRDRILIV
KGGLREDEFNGGYSLRIRQCWDYEQICADHAQRLSLRLDLREKQAWKRIDALLAKHRPGK
TPLRLDLLLRAQSGGVAGMLDLNGSHSVRIDQHLMDSLRADPAVRTLKIKYSPPWA
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgtccacttcccgcttcgtccatctgcacgtccacaccgagttctcgctggcggattcc
accatccgtgtgcccgagaaaccggatcaggctgacccgaaaaaggccaagcaggccaac
ctgctgagccgcgcggtcgaactcgacatgcctgcgctggcggtcaccgacctcaacaac
ctgttcgcgctggtcaagttctacaaggccgccgaaggcgtgggcatcaagccgatcgcc
ggcgccgacgtgatgatcgccacaccggacatgacgccgtggcgcatgaccctgctgtgc
cgcgaccgcgaaggctatctgagcctgtcgcgcctgctgacccgcgcctggatggaaggc
caccgccctgaaggcggcgtggcgattcatccagagtggctgcagagcggccacgtcaac
ctgttcgccctggccggccgcgacagcctggccgggcgcctgttcggcgaaggccgcgcc
gatctggccgagcagcaactggccgactggcaacgcgtattcggcgatggcctgcatctg
gagctcacccgcaccgggcgcgagggcgaagaacgcttcaaccaattcgccctgcatgca
gccggcgtgcgtggcctgccggtggtggccagcaacgatgtgcgctttctgtacgccagc
gacttcaatgcgcacgaagcgcgtgtgtgcatttcctcgggccgcgtgctcgacgatccc
aagcgcccgcgcgagtacagcgaccagcagtacctgaagtctgccgacgagatggccgcg
ctgttcgccgacgtgcccgacgcgatcgacaacacccacgcgctggcgcaacgctgcaat
atcgagatgcgcctgggcacctacttcctgcccgcctatccggtgcccgaagacgaaacg
ctggacagctggatccgcagccaggcgcgcgacggtctggccgcacgcctggaaaaaagc
ccgatcgcctccggcaagacccgccaggattacgtggaccggctcgaattcgagctggac
accatcatcaagatgggcttccccggctacttcctgatcgtggccgacttcatccagtgg
ggcaaaaaccagggcattccgatcggcccgggccgcggttccggcgccggctcgctggtg
gcctgggcgctgcagatcaccgatctggacccgctgccgtacaacctgctgttcgagcgc
ttcctcaatcccgaacgcgtgtcgatgcccgacttcgacatcgacttctgcatggatcgc
cgcgacgaggtgatcgactacgtggcgcgcaagtacgggcgcgaacgggtcagccagatc
atcacctacggcaccatggcggccaaggcggtggtgcgcgacgccgggcgcgtgctcggc
ttcacctatggtctggtcgacagcgtggccaagctgatccccaacatcctgggcatcacg
ctcaaggatgcgatgggcgaaggcaaggactcggagatggcctcgccggacctgatccag
cgctatcaggtcgaagacgacgtgcgcgacctgatggacctggcgcgccagctcgaggac
ctcacccgcaacgccggcaagcacgccggcggcgtggtgatcgcgcccgagccgctttcc
gagttctgcccgctgttcgccgaacacgacgagggcgggcgcggcaagaatcaggtcacc
cagttcgacaaggacgacgtcgaagcggtcggcctggtcaagttcgacttcctcggcctg
cgcacgctgaccatcatcgattgggcggtcaaggcgatcaacgtgcgccacgcgcgcgcc
ggcatcgacccggtcgacatcaccaccctccccctcgacgacgtgcccacttacaagggc
gtgttcgcctcgggcaataccggcgcggtgttccagttcgaatcctcgggcatgcgccgc
ctgctcaaggacgcgcgcccggaccgtttcgaagacctgatcgcgctggtgtcgctgtac
cgccccggcccgatggacctgatcccggacttcaacgcgcgcaagcacggccagcaggag
atcatctacccggatccgcgcaccgaggccatcctcaaggacacctacgggatcatggtg
taccaggagcaggtgatgcagatggcgcagatcgtcggcgattattcgctgggcggcgcc
gacctgctgcgccgcgcgatgggcaagaaagtgccggccgaaatggcaaagcaccgcgag
atcttccgcgagggcgcagccaagggcggcgtgagcgcgcacaaggccgacgaaatcttc
gacctgatggagaagttcgccggctacggcttcaacaagtcgcacgccgccgcctacgcg
ctggtcagctaccagactgcctggctgaaacggcattacccggccgagttcatggccgcc
acgctgtcttcggacatggacaacaccgacaaggtggtcggcttcctcgatgaggtgcgc
aacctcggcttgaccgtcaagccgccgcgcgtcaacgaatcggcctacatgttcgaggcc
gccaccccggacacgattcaatacggcctgggcgcgatcaagggcgtcggccagggcgcg
tgcgaggcgatcatcgaagaacgccagcgcggcggtccttacaccacgctgctggatttc
tgcacgcgtgtgggcaccgcaaagctcaaccggcgcacgctggaagcgatggtcaatgcc
ggcgcgatggacggcctgggcaagaaccgcgcctcgctgatgctgcagctgccggaggtg
atgaaagccaccgagcagatggcgcgcgaacgcgcctcggggcagaactcgctgttcggc
gggccggacccgagtgcaccggcgctgcgtctggacctgccagaaagcaaggaatggccg
ctgggccaactgctcaccggcgaacgcgaaacgctgggcttctatctcagcggccacccg
ttcgacccgcaccgcgacgaagtgcgcgaactggtcggctgcgatctgggagcgctggaa
aagattctcgcctcgcaacagcgtggcggcggtgggggcggcggcgatggcgaaaaacgt
gcctggcgcccggaagtcagtgccattctcgctggcctggtggtcggcgtgcgccgcaag
ggcgacagccaggtgttcgtgcaactggaagacggccgtggccgggtcgagtgcagcgcg
ttctccgatgcgatggccgagttcgggcatctgctcacccgcgaccgcatcctgatcgtc
aagggcggcctgcgcgaggacgaattcaacggcggctacagcctgcgcatccgccaatgc
tgggactacgagcagatctgcgccgaccacgcgcaacggctgtcgctgcgcctggacctg
cgcgaaaaacaggcctggaagcgcatcgacgccctgctggccaagcaccgccccggcaag
acgccgctgcgcctggacctgctgttgcgcgcccaaagcggcggcgtcgccggcatgctc
gacctcaacggcagccactcggtgcgcatcgaccagcacctgatggacagcctgcgcgcc
gacccggcagtgcgcaccttgaagatcaagtacagcccaccgtgggcgtga
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