Xanthomonas hortorum: XJ27_12140
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Entry
XJ27_12140 CDS
T05082
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xhr
Xanthomonas hortorum
Pathway
xhr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XJ27_12140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhr03019
]
XJ27_12140
Enzymes [BR:
xhr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XJ27_12140
Messenger RNA biogenesis [BR:
xhr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XJ27_12140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
AAA_22
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-ProteinID:
ASW46624
LinkDB
All DBs
Position
2764801..2766183
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AA seq
460 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL
QHLGTTPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD
TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ
DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL
LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL
VATDIAARGIDINELPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ
IVRMLGRDVEIRDVPGYEPQTPIRWGNSAPGRAEQPGGDRAPRKSHARRPHGDAPRQAHA
GPKKPGGQRSSGPRQAGVAAGAGAGRRDGGRGGQRPSGTR
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatccctgggccttgcgcccttcctgctgcgcgcgttggccgagcagggc
tatgaaacccccaccgcgatccagcagcaggcgatcccgctggtgctggcaggtcacgac
ctgctggccggcgcacagaccggtaccggcaagaccgccgcgttcggcctgccgctgctg
cagcacctgggcaccacgccgcagccggtcaacggcccgcgcaagccgcgcgcgctgatc
ctgacccccacccgcgagctggccacccaggtgcatgacagcctgcgcggctacagcaag
tacctgcgtattcccagcgcggtgatctacggcggcgtgggcatgggcaaccagctcgac
accctgcgtcgtggcgtagatctgctgatcgcctgcccgggccggctgatcgaccatatc
gagcgtcgcagcgtggacctgtccggcatcgaagtgctgatcctggacgaagccgaccgc
atgctcgacatgggctttttgccgtcgatcaagcgcatcctgaccaagctgccgcgccag
gaccgtcagaccctgctgttctcggccacgttcgaagagaacatcaagcagctggcgctg
gaattcatgcgcaacccgatgcagatccaggtcaccccgagcaacaccgtggccgagagc
atcacccaccgcgtgcacccggtcgatggcgcccgcaagcgcgacctgctgctgcacctg
ctggcgcaggacagccgcgagcagaccctggtctttgcgcgcaccaagcacggcagcgac
aagctggcgctgttcctggaaaagtccggcatcaagaccgcggcgatccacggcaacaag
agccagggtcagcgtatgcgtgccctgagcgacttcaaggccggccgcgtgaccgtgctg
gtggccaccgatatcgccgcgcgcggcatcgacatcaacgagctgccgaaggtcatcaac
tacgacctgccaatggtggccgaggattacgtgcaccgcatcggccgtaccggccgtaac
ggctccaccggcgaggcgatctcgctggtggcgcaggacgaagccaagctgctgcgccag
atcgtgcgcatgctgggccgcgacgtggaaatccgcgacgtgccgggctacgagccgcag
accccgatccgttggggcaacagcgccccgggccgtgccgaacagccgggtggcgatcgc
gcgccgcgcaagagccacgcccgtcgtccgcatggcgatgcgccgcgtcaggcgcatgcc
ggcccgaagaagccgggtggccagcgcagcagcggtccgcgtcaggccggtgttgccgcc
ggcgccggcgcaggccgtcgcgatggtggtcgtggtggccagcgtccgagcggcacgcgc
tga
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