Xanthomonas hortorum: XJ27_13210
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Entry
XJ27_13210 CDS
T05082
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xhr
Xanthomonas hortorum
Pathway
xhr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XJ27_13210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhr03019
]
XJ27_13210
Enzymes [BR:
xhr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XJ27_13210
Messenger RNA biogenesis [BR:
xhr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XJ27_13210
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RhlB
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ASW46822
LinkDB
All DBs
Position
complement(2989749..2991485)
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AA seq
578 aa
AA seq
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MSDKPLTDLTFSTFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKT
LAFLVTVVNRLLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYG
GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPS
DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLL
NRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMSLPDIEAYIAQKIPVEPVTSELLIPLPRVARVPVEGEEADDDAGDSVGTIFRE
AREQRAAEEQRRGGGRSGPGGASRSGSSSGGGRRDGGSADGKPRPRRKPRVEGDVAAETA
TVAAASETPVVAAATAEAPSTILADAERAPRKRRRRRNGRPVEGAEPAVASTPVAAPAAP
RKPTQVVAKPVRSATKPSGSPSLLSRIGRRLRSLVSGN
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaccgctgaccgatttgaccttttccacgttcgacctgcatccggcgctg
atcgccgggctggagagcgccgggtttacccgctgtaccccgatccaggcgctgaccctg
ccggtcgcgctgccaggcggcgatgtcgccggccaggcccagaccggcaccggcaagacc
ctggcgttcctggtgacggtggtgaaccgcctgctgaaccgcccggcgctggccgaccgc
aagccggaagacccgcgcgcgctgatcctggccccgacccgcgagctggcgatccagatc
cacaaggatgcggtcaagttcggcgccgacctgggcctgcgctttgcgctggtttacggc
ggggtggactacgacaagcagcgcgagctgctgcagcagggcgtggacgtgatcatcgcc
accccgggccggctgatcgactacgtcaagcagcacaaggtggtctcgctgcacgcctgc
gaaatctgcgtgctggacgaagccgaccgcatgttcgacctgggcttcatcaaggacatc
cgcttcctgctgcggcgcatgcccgagcgcggcacccgccagaccctgctgttctcggcc
acgctcagccatcgcgtgctcgagctcgcctacgagcacatgaacgagccggagaagctg
gtggtcgaaaccgagaccatcactgccgcacgcgtacgtcagcgcatctatttcccctcc
gacgaagagaagcagacgctgctgctcggcttgctgtcgcgtagcgaaggcgcgcgcacc
atggtgttcgtcaacaccaaggcgttcgtcgagcgcgtggcgcgcacccttgagcgtcat
ggctaccgggtcggcgtgttgtccggcgatgtgccgcagaagaagcgcgagtcgctgctc
aaccgcttccagaagggccagctcgaaatcctggtcgccaccgacgtggccgcacgcggc
ctgcatatcgacggcgtcaagtacgtctacaactacgacctacccttcgatgcggaagac
tacgtacaccgcatcggccgtaccgcgcgtctgggcgaagaaggcgatgcgatcagcttc
gcctgcgagcgctatgcgatgagcctgccggacatcgaggcctacatcgcgcagaagatc
ccggtcgagccggtgacctccgagctgctgatcccgttgccgcgtgtggcacgcgtgccg
gtggaaggcgaagaggccgacgacgacgctggcgacagcgtgggcaccattttccgtgaa
gcgcgcgaacagcgtgcagccgaagaacagcgtcgcggcggtggccgtagtggcccgggt
ggcgcttcgcgcagcggcagcagcagtggcggtggtcgccgtgacggcggcagtgccgat
ggcaagccgcgtccgcgccgcaagccgcgtgtcgaaggcgacgttgccgccgagacggca
accgttgccgcagcgtcggaaacgcctgtggtcgccgcagcgactgccgaagcgccgtcg
accatcctggccgatgccgagcgcgcaccgcgcaagcgtcgccgtcgccgtaacggtcgt
ccggtcgaaggtgccgagcctgccgtggcgtccacaccggttgccgcgccggccgcacca
cgcaagccgacccaggtggtcgcaaagccggtgcgcagtgcgaccaagccctcgggtagc
ccgtcgctgctgagtcgtatcggccgcagattgcgttcgctggtctccggcaactga
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