Xanthomonas hortorum: XJ27_13220
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Entry
XJ27_13220 CDS
T05082
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
xhr
Xanthomonas hortorum
Pathway
xhr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XJ27_13220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhr03021
]
XJ27_13220
03019 Messenger RNA biogenesis [BR:
xhr03019
]
XJ27_13220
Transcription machinery [BR:
xhr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
XJ27_13220
Messenger RNA biogenesis [BR:
xhr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
XJ27_13220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
OB_RNB
S1CSD-TOTE-2
Spore_III_AA
Fungal_virus_P2_C
AAA_22
TFIIA
Motif
Other DBs
NCBI-ProteinID:
ASW46824
LinkDB
All DBs
Position
2992303..2994150
Genome browser
AA seq
615 aa
AA seq
DB search
MRKPRVSKTAVANDDGGAQQPNLPLPASPAPDVPRAPQAPSHAADSAPAQTSSDGAYAGN
APSASQGNQGGDNHGESREGGQSQQQRFNQAQNQQNQNQAQSRGQGQNQGQAQVQGQPQN
QGQGQDQGQNAGQNQQGQGQGQNQQGNRRDRFRNRRDRGPRDRFGNETGGGMPSSDGSNE
PFIARPHPAVPDGFPVYSLSDLKRMPAQKLLDIADQLNIQEGVARARKQDVIFALLKVLT
RHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIRF
PKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRFRLERGDGSTEDITGRILD
LMAPQGKGQRALIVSPPKAGKTMMMQQVATAITSNHPEVHMIVLLIDERPEEVTEMQRTV
RGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSGK
VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSEV
HLNRRITEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPMDEIAAMEFLLDKM
KTTKSNDEFFSSMKR
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcaagccgcgcgtgagcaagaccgccgttgccaatgacgacggtggcgcgcaacag
cccaacctgcccttgcccgccagccctgcaccggatgttccgcgtgcgccgcaggcaccg
tcgcacgctgccgattcggcaccggcgcagacgtccagcgatggcgcatatgccggtaac
gcccccagcgccagtcagggcaaccagggcggcgacaaccatggcgaatcccgcgagggt
ggccagtcgcagcagcagcgcttcaaccaggcgcagaaccagcagaaccagaatcaggcg
caaagccggggtcaaggccagaaccagggtcaggcccaggtccagggccagccgcaaaat
caaggtcagggtcaggaccaaggtcagaacgccggccagaatcagcaaggtcagggtcag
gggcagaaccagcagggcaatcgccgtgaccggttccgcaaccgccgcgaccgtgggccg
cgtgatcggtttggtaatgaaaccggtggcggcatgccctcgtccgatggcagcaacgag
ccgtttatcgcgcgtccgcacccggccgtgccggatggcttcccggtgtattcgctgagc
gatctcaagcggatgccggcgcagaagctgctggatatcgccgatcagctcaacatccag
gaaggcgtggcgcgtgcgcgcaagcaggacgtgatcttcgccctgctcaaggtgctgacc
cgccacggcgaaggcgttgccgccgacggcgtgctggaaatcctgcccgacggcttcggt
ttcctgcgtgccgccgaagccagctacctggccggtccggacgatacgtatatttcgccc
agccagatccgccgcttcaacctgcgcaccggcgaccatctgtccggccgcatccgcttc
ccgaaggacggcgaacgctatttcgcgctgtcgatcgtcgacaccatcaacggcgagccg
ctggaagccagcaagaacaaggtgctgttcgagaacctgactccgctgttcccgcgccgg
cgtttccgtctggaacgtggcgatgggtccaccgaggacatcaccggccgcatcctggat
ctgatggcgccgcagggtaagggtcagcgtgcgctgatcgtctccccgcccaaggccggt
aagacaatgatgatgcagcaggtggccacggccatcaccagcaatcatcccgaagtgcac
atgatcgtgttgctgatcgacgagcgcccggaagaagtgaccgaaatgcagcgcaccgtg
cgcggcgaggttatctcttccacgttcgacgaaccggctgcgcgtcacgtgcaggttgcc
gaaatggtgatcgagcgggccaagcgcctggtcgagcacaagaaggacgtggtgatcctg
ctcgactcgatcacccgtctggcgcgcgcctacaacaacgtggtgcccagctccggcaag
gtgctcaccggtggtgtggacgccaacgcgttgcatcgcccgaagcgcttcttcggtgcg
gcccgtaacgtggaagaaggcggttcgctgaccattattgctacggcgctggtcgagacc
ggcagcaagatggacgaggtgatctacgaagaattcaagggcaccggcaatagcgaagtg
catttgaaccgtcgtatcaccgaaaagcgcgtctacccggcgatcgacatcaaccgttcg
ggtacgcgtcgcgaagatctgttgatcgagccggagctgctgcagaagatctggattctg
cgcaagctgctgcacccgatggacgaaatcgcggcaatggaattcctgctggacaagatg
aagaccaccaagtccaacgacgagttcttcagttcgatgaagcgctga
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