Xanthomonas hortorum: XJ27_15350
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Entry
XJ27_15350 CDS
T05082
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
xhr
Xanthomonas hortorum
Pathway
xhr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
XJ27_15350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xhr03400
]
XJ27_15350
Enzymes [BR:
xhr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
XJ27_15350
DNA repair and recombination proteins [BR:
xhr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XJ27_15350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASW47186
LinkDB
All DBs
Position
complement(3514071..3518144)
Genome browser
AA seq
1357 aa
AA seq
DB search
MSASPVTDPYLHLPLQGVRLIEASAGTGKTFTLATLFTRLVVERGLRIGQILAVTFTEAA
TQELRRRIRERLVLAATLVPDAPVGAAPAATDLADDPSRPGPLLHEAPDAFLATHLAPGT
ETLTAPVGAAPAATGLANDPSWPGPLLQEAPDVLLTRAVLATHLATGTETPAALRRRLQQ
AVEEIDLAAVFTIHGFCARVLREHALESGQAFAAPELLANDRELLGEVAADLWRQRAADA
AMAEDLIALWSGGPDALASDLRALVRHPTLLPAVATTTDDAAALLQAVQDASTALAAAFQ
SHGTAFFEAIMSAIDGGILSKVSYKPEWLASLWHWFDSFAAAPSTHTAPHPKLIKLTAAE
LAAGTNKKFVERTPASPLSHEIDGYLTALARVEEWRTRRRIRLLHALRDDAIARLALLKR
QRRVQTYDDLVDGVAHALEGAQAEALVTRLRAQYAIALVDEFQDTDDRQWAIFSNVFGEG
PLARAAGLEPALFLIGDPKQAIYGFRGGDVRTYLAAAVTAELAPPLSHNFRSRPGVLAAI
DALYAQAGYSEAFLTDGIAFHPVRPGTKRVDADLQRDGGPAPALTLWRAPEPPLPSKGKP
KPWSAGRARELATAACVAAIRGWLAGGRDGTATVNGRPVQAGDIAVLVRSHGEATRMQQA
LGAVGVPAVAAGKQSLFATDEALELLALLQALLDPGDDSRLRAALATVLIGADAAAIAAL
AHDGERHRRWQQQALDWRERWQRGGPLALIGDLGAAHGQRLLALVDGERRLTNYLQLAEL
LQEADARALGPHGLVDWLSRRIANADDNDEAQQLRLESDARRVQIVTLHKSKGLEYPLVF
LPYIGIGRSDKGAGRHCVVHAPELGRQLHWNVSKWSRDKDDPTWSAAEAAWKQEQRAEDA
RLLYVGLTRAEHALWIASGPFHQHERTALSGMLRALDTLQGAAGEGAVVVDTSTPPATLP
RLPPPIEAQVPPARTPQRHIAPEWWVYSFTQLANADAGAATDPMASATVVGSGGSDEPSG
SEAIAVAAEVDTFDPRFAGNRFGVVMHDVFERCDFAAWHAWHPGQPAPEGQAAAILEALQ
RGGYTQDELDDGLAMLTALIGHTLTVVLPEGTTLAAVPEPQRRNEMEFHFAMRPTRVEAL
LALLHRFGVVSDRQAFGARQRLEGLMTGLIDLTYTVDGRWYVLDYKSNRLPSYDADALAR
AMAHSEYELQALIYTVALHRWLRFRLGDAYDYARDFGGVRYLFCRGLDATRNPAADSSSI
LGSGFDSNSNSNSDSVNGASSVSGSDPASDAMSDTPAPNTPVPGIHAWRFDPALVQALDA
LFAGNPTEPLSSDALKPLSPRERGWGEGTSTMGTPTP
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccagccccgttaccgacccgtatctgcatttgccgttgcaaggcgtacgcctg
atcgaggccagcgccggcaccggcaagaccttcaccctggccaccctgttcacccggctg
gtggtcgagcgcgggctgcgcatcggtcagatcctcgcggtcaccttcaccgaagccgcc
acccaggaactgcgccgccgcatccgcgagcgcctggtgctggcagcaaccctggtcccc
gacgcccccgtaggagcggccccggccgcgaccgacctcgccgatgacccgtcgcggcca
gggccgctcctacacgaagcgcccgacgcctttctcgccacgcacctggcccctggcacc
gaaacactcaccgcccccgtaggagcggccccggccgcgaccggcctcgccaacgacccg
tcgtggccagggccgctcctgcaggaagcgcccgacgtcctgcttacgcgcgccgtcctc
gccacccacctggccaccggtaccgaaacacccgccgccttacgccgccgcctgcagcag
gcggtggaagaaatcgacctggccgccgtcttcaccatccacggtttctgcgcacgtgtg
ctgcgcgaacatgcgctggaaagcggccaggccttcgccgcgccggaactgctcgccaac
gaccgcgaactgctgggcgaagtcgccgcagatctgtggcgccagcgcgccgccgatgcg
gcgatggccgaagacctgatcgcgctgtggtcgggcggcccggatgcattggctagcgat
ctgcgcgcgctggtgcgccatccgacgctgttgccggcggtggccacaaccaccgacgat
gcggccgcgctgctgcaggccgtgcaagacgccagcaccgccttggccgccgcattccag
tcccacggcaccgcgtttttcgaagcgatcatgtccgccatcgacggcggcatcctgagc
aaggtcagctacaagcccgagtggctcgcatcgctgtggcattggttcgacagcttcgcc
gccgcgccatcgacgcacaccgcgccgcaccccaagctgatcaaactcaccgccgcggaa
ctggccgccggcaccaacaagaagttcgtcgagcgcacaccggcctcgccgctgagccac
gagatcgacggctatctcaccgcgctggcccgtgtcgaagaatggcgcacccgtcgccgc
atccgtctgctgcacgcactgcgcgacgatgccatcgcacgattagcattgctcaagcgc
cagcgccgcgtgcagacctacgacgacctggtcgatggcgttgcgcacgcactggaaggc
gcgcaagccgaggccctggtcacacggctgcgcgcgcaatacgccatcgcgctggtggac
gaattccaggacaccgacgaccgccagtgggcgatcttctccaacgtgttcggcgaaggc
ccgctcgcacgcgcggccggcctggagccggcgctgtttttgatcggcgaccccaagcag
gccatctacgggttccgtggcggcgacgtgcgcacctatctggccgccgcagttaccgcc
gaacttgcccccccgctgagccacaacttccgctcgcgcccgggcgtgctggcggccatc
gacgcgctgtacgcgcaggctggctatagcgaggccttcctcaccgacggcatcgccttc
cacccggtgcggcccggcaccaagcgggtggatgccgacctgcaacgcgatggcggcccc
gccccggcgctgacgctgtggcgcgcgccggaaccgccgctgccaagcaaaggcaaaccc
aaaccctggagcgccggccgcgcgcgcgagctggccaccgccgcctgcgtcgcggccatc
cgcggctggctggccggtggccgcgacggcaccgccaccgtcaatggccgcccggtgcag
gccggcgatatcgccgtgctggtgcgcagccacggcgaggccacgcgcatgcaacaggcg
ctgggcgcggtgggagttccggcggtcgcagcaggcaagcagagcctgttcgccaccgac
gaggcgctggaactgctggccctgctgcaggccttgctcgacccgggcgacgacagccgc
ctgcgcgccgccctggctactgtattgatcggcgcagacgccgccgccatcgccgcgctc
gcacacgacggcgagcggcatcgccgctggcagcagcaggcgctggactggcgcgagcgc
tggcaacgcggcggcccgctcgccttgatcggcgaccttggcgctgcgcacgggcaacgc
ctgctcgccctggtcgatggcgagcgccgcctcaccaactacctgcagctggccgaactg
ctgcaggaggccgacgcccgcgcgctcggcccgcacggcctggtcgactggctgtcgcgc
cgcatcgccaatgccgacgacaacgacgaagcccagcagctgcggctggaatcggacgcg
cgccgcgtgcagatcgtcaccctgcacaagagcaagggcctggaatatccgctggtgttc
ctgccgtacatcggcatcggccgcagcgacaagggcgccggccgccattgcgtagtgcat
gcgccggagctcggccgccagctgcactggaacgtgtccaaatggagccgggacaaggac
gaccccacctggagcgccgccgaagctgcctggaagcaggaacaacgcgccgaagacgcc
cgcctgctctacgtcggcctgactcgcgccgagcacgcgctgtggatcgccagcggcccg
ttccatcagcacgagcgcacggctttgtccggcatgctgcgcgcgctcgatacgctgcag
ggcgcggccggcgagggcgcagtggtggtcgacacgtccacgccgcccgccaccctgccg
cgcctgccgccaccgatcgaagcgcaggtgccgcctgcgcgcaccccgcagcggcatatc
gccccggagtggtgggtctacagcttcacccagctggccaacgccgatgccggcgccgcc
accgacccgatggccagcgccaccgtggtgggcagtggcggcagcgacgagccgtccggc
agcgaggcgatcgcggtggccgccgaggtcgacaccttcgacccgcgctttgccggtaac
cgctttggcgtggtgatgcacgacgtgttcgagcgctgcgacttcgccgcctggcatgcc
tggcaccccggccaacccgcacccgagggccaggccgccgccatcctcgaggcgctgcaa
cgcggcggttacacccaggacgaactcgacgacggcctggccatgcttaccgccctgatc
ggccacaccctcaccgtcgtcctgcccgaaggcaccaccctggccgccgtgcccgagccg
cagcgccgcaacgagatggaattccacttcgccatgcggcccacccgcgtggaggcattg
ctcgcattgctgcatcgcttcggcgtggtgagcgaccgccaggccttcggcgcgcgccag
cgcctggaaggcctgatgaccggcctgatcgacctcacctacaccgtggacggccgctgg
tacgtgctcgactacaagtccaaccgcctgcccagctacgacgccgacgccctggcccgc
gccatggcgcacagcgagtacgaattgcaggcgctgatctacaccgtggccctgcaccgc
tggctgcggttccgcctgggcgatgcctacgattacgcccgcgacttcggcggcgtgcgc
tacctgttctgccgcggcctggatgccacccgtaaccccgcagccgactccagctccatc
ctcggttccggtttcgactccaactccaactccaactccgactccgtcaacggcgccagc
tccgtctccggttccgaccccgccagcgacgccatgtccgacacgcctgcacccaatacg
cctgtgcctggcatccacgcctggcgcttcgacccggcgctggtccaagccctggacgcc
ctgttcgccggcaaccccaccgagcctctttccagtgacgccttaaagcccctctcccct
cgggagaggggttggggtgagggtacgtccaccatgggaacgcccaccccatga
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