Xanthomonas hortorum: XJ27_21510
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Entry
XJ27_21510 CDS
T05082
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xhr
Xanthomonas hortorum
Brite
KEGG Orthology (KO) [BR:
xhr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhr03019
]
XJ27_21510
Enzymes [BR:
xhr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
XJ27_21510
Messenger RNA biogenesis [BR:
xhr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
XJ27_21510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND3
AAA_30
SRP54
Cas3-like_C_2
NACHT
nSTAND_NTPase5
T2SSE
AAA_25
AAA_23
TsaE
Motif
Other DBs
NCBI-ProteinID:
ASW48226
LinkDB
All DBs
Position
5027512..5031633
Genome browser
AA seq
1373 aa
AA seq
DB search
MSAIDTDLATTLREGRSAVDGGMSRDRGRLLGLWSRWQGKPGNVQLRQAFEQALAASHAQ
RKARAEQQPAITLDTQLPIAREAERIIALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRG
AAGMIGCTQPRRIAARAVAARVAEELKTPLGTTVGFQVRFTDRVGEDSRIKFMTDGILLA
EIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLVKRPDLKLIVTSATIDTERFAQH
FNDAPVISVEGRTFPVEVRYRPLEGDAGTDSDGEQGNGRDGERTVNDAIVAAIDEITRID
PRGDVLMFLPGEREIRDAHQSLERRKYRETEVVPLYARLSAQDQDRVFNPGPRRRLVLAT
NVAETSLTVPRIRYVVDPGFARIKRYSPRQKLDRLHIEPISQASANQRMGRCGRIAEGIC
YRLYAEADFAARPAFTDPEIRRASLSGVILRMLQLGLGRIEDFPFLEAPDERAVADGWQQ
LLELGAIDGERRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIVIASFLGIQDPRER
PPEAREAADNAHALFADARSEFVGILRLWEAYRQVHEELTQSKLRDWCNRHFLGFLRMRE
WRELHRQLRLLCEELGWSEEPAAVMMAPLLAGANAPPREDGHNANRPTRGQLHRAARLAR
EGKPEPSAAPARTTSAAANKQAEAAEVSARTSERERAAAYQALHRALLAGLPTQIGHRTE
KGDFLAARQRRFVPFPGSALARKPPPWILAATLLDTQKVWGMTNAAIEPDWAIAELPHLL
ARKHFDPHWSRAQGQVVASEQISLFGLVLAPKKPVHFGKIDPAAAHDLFVRQGLVTGEIN
TRAAFVADNLKVLEQAREEEAKLRRAGIVADEEWQARWYLDRIPSELHSASGLDAWWKTL
PPDKRRSLHWSLNDLLPGEGSEADRFPKYFSLGDARLPLHYRFEPGAIDDGVTLDVPLHL
LNALDPTRLSWLAPGFVADKASALIRSLPKAQRRNYVPAPDFGRAFYEAYSIASADDIRG
ELARFLSKATGTQVAALDFDEEALDTHLLMNLRLRDDDGKVLAESRDLDGLRARFGERAG
QAFAARAGRALAAEGLRDFPATPIPEQVSGEAGVPAYPALVDQGEDAALRIFADRNEAAQ
AHPRGVRRLLEIALADKIKQARKQLPVSPKTGLLYAAIESQERLRGDLVDAALNAVLAEG
LGAIRDAGAFAQRRDDATKRLFGEAMERLTLAESILGAVAELKPLLEAPLMGWARGNLDD
MEQQLRALVHAGFLRETPAEALANYPRYLKAMILRTERAKRDPARDQTRMLELKPFVDAL
GDAAARGLQQREQWQSLRWDLEELRVSVFAQELGAKSGVSAKKLSQRVAALRG
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctatcgataccgacctggccaccaccttgcgcgagggccgtagcgccgtcgat
ggcggcatgagccgcgaccggggccgcttgctcggcctgtggtcgcgctggcaaggcaaa
cccggcaacgtgcagctgcgccaggccttcgagcaggcgctggcggcgtcgcatgcgcag
cgcaaggcgcgcgccgagcagcagcccgccatcacgctggacacgcaactgccgatcgcg
cgcgaggccgagcgcatcatcgcgttgatccgcgatcatcaagtggtggtcattgccggc
gaaaccggctcgggcaagaccacccagctgcccaagctgtgtctggcggccgggcgcggg
gcggccggcatgatcggctgcacccagccgcgccggatcgccgcacgtgcggtggctgca
cgcgtggccgaggagttgaagacgccgttgggcaccacggtgggcttccaggtgcgcttc
accgaccgggttggtgaagactcgcggatcaagttcatgaccgacggcatcctgctggcc
gagatcgccagcgaccgctggttgtcggcctacgacaccatcatcgtggacgaggcgcac
gagcgcagcctcaacatcgattttttgcttggctatctcaagcagttgctggtcaagcgc
cccgatctgaagttgatcgtgacgtcggccaccatcgacaccgagcgtttcgcgcagcat
ttcaacgatgcgccggtgatcagtgtggaaggacgcacgttcccggtcgaggtgcgctat
cgcccgctcgaaggcgacgccggtactgacagcgacggcgagcaaggcaacggccgcgat
ggcgagcgcaccgtcaacgatgcgatcgtggcggcgatcgacgaaatcacccgtatcgac
ccgcgcggcgacgtgctgatgttcctgcccggcgagcgcgaaatccgcgatgcgcatcaa
tcgctggaacggcgcaagtaccgcgagaccgaagtggtgccgttgtacgcgcggctgtct
gcgcaggatcaggaccgggtgttcaatccgggcccgcgtcggcgcctggtgctggccacc
aacgtggccgagacctcgctgacggtgccgcgcatccgctatgtggtcgaccccgggttt
gcgcgcatcaagcgctatagcccgcgtcaaaagctggaccgcttgcatatcgagccgatt
tcgcaggccagcgccaaccagcgcatgggccgttgcgggcgcatcgccgagggcatttgc
taccgcctgtatgccgaagccgactttgccgcccggccagcgttcaccgacccggagatc
cggcgcgcgtcgttgtccggcgtgatcctgcgcatgctgcaactgggtctcgggcggatc
gaggatttcccgtttctggaagcgccggacgagcgtgcggtggccgatggctggcagcag
ttgctggagctgggcgcgatcgatggcgagcgccgcctgaccgcgaccggccgccagatg
gcgcgcctgccggtggacgtcaaactggcgcgcatgctggtggccgcgcagcagcacggc
tgcctgcgcgagatgatcgtcatcgcctccttcctgggcatccaggatccgcgcgagcgc
ccgcccgaagcgcgcgaggccgccgacaacgcacatgcgctgtttgccgacgcgcgctcg
gaattcgtcggcatcctgcgcttgtgggaagcatatcgacaggtgcacgaagagctcacc
cagtccaagttgcgcgattggtgcaatcgacattttctgggctttttgcgcatgcgcgag
tggcgcgaactgcatcggcagctacgcttgttgtgcgaagaactcggttggagcgaagag
ccggccgcggtgatgatggcgccgctgctggccggtgccaacgcaccgccgcgcgaggac
ggccacaacgccaaccggcccacgcgcgggcagctgcatcgcgccgcgcgtctggcgcgc
gaaggcaagccggagccaagtgcggcacctgcacgcaccacctccgcagctgcgaacaag
caggccgaggctgctgaagtatcggcacggaccagcgagcgcgaacgcgctgcggcgtat
caggccttgcatcgcgcgctgttggccggcctgccgacgcagatcggccatcgcaccgaa
aaaggcgattttctcgccgcacggcaacgccggttcgtgccgttccccggctcggcgttg
gcgcgcaaaccgccgccgtggattctggccgccacgctgctggacacgcagaaagtctgg
ggcatgaccaatgccgcgatcgagccggattgggcgatcgccgagctgccgcatctgctg
gcgcgcaagcatttcgacccgcattggtcgcgtgcgcaggggcaggtggtcgcctccgag
cagatcagcctgttcgggctggtgctggcgccgaaaaagccggtgcatttcggcaagatc
gacccggccgccgcgcacgacctgttcgtgcgtcagggcctggtgacgggcgaaatcaat
acgcgcgcggcgttcgtggccgacaacctcaaggtgctggagcaggcgcgcgaagaagaa
gccaagttgcgtcgcgccggcatcgtggccgacgaggagtggcaggcacgttggtatctg
gatcgcattccgtccgagctgcattcggccagcggcctggatgcgtggtggaaaaccttg
ccgccggacaaacgccgcagcctgcattggtcgttgaacgatctgctgccgggcgaaggc
agcgaggccgatcgcttcccgaagtatttctcccttggcgatgcgcggctaccgttgcat
taccgcttcgagccaggcgccatcgatgacggcgtcaccctggatgtgccgttgcatctg
ctcaatgcgctggatccaacgcggctgtcgtggctggcgcctggctttgttgccgacaag
gcatctgcattgattcgtagcctgcccaaggcgcagcgccgtaactatgtgccggcgccg
gatttcgggcgcgcgttctacgaggcctacagcattgcgtcggccgacgatatccgtggc
gagctggcgcgctttctgagcaaggccaccggcacgcaggtggcggcgctggatttcgac
gaggaggcgctggacacgcatctgctgatgaacctgcgcctgcgcgatgacgacggcaag
gtgctggccgagtcgcgcgatctggacgggttgcgcgcacgcttcggcgagcgggcgggg
caggcgtttgccgcacgtgccggccgcgccctggctgccgagggcttgcgcgatttcccg
gccaccccgatccccgaacaggtgtcgggcgaggccggtgtgccggcgtatccggcgttg
gtggatcagggcgaagacgcagcgctgcgcatctttgccgaccgtaacgaagcggcgcag
gcgcatccgcgcggcgtgcgccggctgctggaaatcgcgcttgccgacaagatcaagcag
gcgcgcaagcaattgccggtgtcgcccaaaaccgggttgttgtacgcggcgatcgagtcg
caggagcgactgcgcggcgatctggtcgatgccgcgctcaatgcggtgctggcagaaggg
ctgggcgcgattcgcgacgcgggtgcctttgcgcaacgccgcgacgatgcgaccaagcgc
ttgttcggcgaggcgatggagcggttgacactggccgaaagcatccttggcgccgtggcc
gaactcaagcccctgctggaagcgccgttgatgggctgggcgcgcggcaatctggacgat
atggagcagcaattgcgcgcgttggtgcatgccggcttcctgcgcgagaccccggccgag
gcgctggccaactatccgcgttatctcaaggcgatgatcctgcgaaccgagcgcgccaaa
cgcgatccggctcgcgaccagacacgcatgctcgaactcaaaccgtttgtggatgcgttg
ggtgatgccgccgcacgtggcttgcagcaacgtgagcaatggcagtcgttgcgctgggat
ctggaagagctgcgcgtttcggtgttcgcgcaggagctgggcgccaagtcgggcgtgtct
gcgaagaagttgtcgcagcgggtggccgcgttgcgcggttaa
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