Xanthomonas hyacinthi: FZ025_03910
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Entry
FZ025_03910 CDS
T06345
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xhy
Xanthomonas hyacinthi
Pathway
xhy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xhy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FZ025_03910 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhy03021
]
FZ025_03910 (rpoC)
03400 DNA repair and recombination proteins [BR:
xhy03400
]
FZ025_03910 (rpoC)
Enzymes [BR:
xhy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FZ025_03910 (rpoC)
Transcription machinery [BR:
xhy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FZ025_03910 (rpoC)
DNA repair and recombination proteins [BR:
xhy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FZ025_03910 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QGY75852
LinkDB
All DBs
Position
complement(830510..834727)
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTALERRQLLTEEQFLTARQEHGDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLVEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHECGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANIAEVKRAYDNR
AVELHAKVKVRITETVIDEDGSRSKKTSIVDTTIGRALLAEILPEGLPFALANTELTKKN
ISRLINSSYRQLGLKDSVVFADKLMYTGFAYATRAGVSIGIDDMLIPDEKKGILTEAEAE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERVAKAMMDTIGTEKVTNAKGEIIDQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEPDCGTTEGLTMTPIVEGGDVVEPLRDRVL
GRVVAEDVFLPGNDEDPIVTRNTLLDEQWVAKLEEAGVQTLKVRSTITCASSFGVCARCY
GRDLARGHLVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSIK
FNNLKSVEHANGSLVAVSRSGELSVLDGHGRERERYKLAYGATITAKDGDAVKAGQSVAN
WDPHNHPIVSEVAGFIRFIDFIDGVTVIEKTDELTGLASREITDPKRRGTQAKELRPIVR
IVDGKGNDLTIPGTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFE
GEHVAKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEITDQGNSKFLNGEQAERQRVIEENARLGNRNELPAKYDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTSDTLRGLKENVIVGRLIPAGTGLAYHSLRRRNSSGLTESE
MQTLSGGNAEPAVETPAPAAASSEE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaaccagcagcgccagacgctggacttcgacgcgatc
aagattgcgttggcctcgccggacctgatccgttcgtggtccttcggcgaagtgaagaag
ccggaaacgatcaactaccggaccttcaagcccgagcgcgacggcctgttctgcgccgcg
atcttcggtccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgagaagtgcggcaccgaagtgaccctggccaaggtgcgccgcgag
cgcatgggccatatcgacctggcctcgccggtcgcgcacatctggttcctgaagtcgctg
ccctcgcgcatcggcctgatgctggacatgaccctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctacgtggtgaccgagccgggcctgaccgccctggagcgccgccagctgctg
accgaagagcagttcctgaccgcgcgccaggagcacggcgacgacttcgatgccgcgatg
ggcgccgaggcggtgtacgagctgctgcgcacgatcgacctgcagtcggaaatgacccgc
ctgcgcgaggaaatcgccagcaccggttcggaaaccaagctcaagcgcctgaccaagcgc
atcaagctggtcgaagccttcctcgagtcgggcaaccgtccggagtggatggtgatgacc
gtgctgccggtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttc
gcgacctccgatctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgcgc
cgcctgctcgaactcaatgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtggatgcgctgctggacaacggccgccgcggccgcgccatcaccggcaccaac
aagcgcccgctgaagtcgctggccgacatgatcaagggcaagcagggccggttccgccag
aacctgctcggcaagcgcgtggactactccggccgttcggtcatcgtggtcggcccgacc
ctgcgtctgcacgagtgcggcctgccgaagaagatggcgctggagctgttcaagccgttc
gtgttcgccaagctgcagcgtcgcggcctggccaccaccatcaaggctgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaggtcatccgcgagcatccg
gtgctgctgaaccgtgcgccgaccctgcaccgtctgggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggcgatccagctgcatccgctggtgtgtaccgcgttcaacgccgac
ttcgacggcgaccagatggccgtgcacgtgccgctgtcgctggaagcgcagctggaagcg
cgcgcgctgatgatgtccaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgctgggcctgtactacatgagccgcgccctggagaacaag
aagggcgagggcatggtgttcgccaacatcgccgaagtgaagcgcgcctacgacaaccgt
gcggtcgagctgcacgccaaggtcaaggtccgcatcaccgagacggtgatcgacgaggac
ggcagccgcagcaagaagacctcgatcgtggacaccacgatcgggcgtgcgctgctggcc
gaaatcctgccggaaggcctgccgttcgcgctggccaacaccgagctgaccaagaagaac
atcagccgcctgatcaactccagctaccgccagctgggtctgaaggacagcgtcgtgttc
gccgacaagctgatgtataccggcttcgcctacgcgacccgcgccggcgtgtcgatcggc
atcgacgacatgctgatcccggacgagaagaagggcatcctgaccgaggccgaggccgaa
gtgctggaaatccaggagcagtaccagtccggcctggtcaccgccggcgagcgctacaac
aaggtcgtggacatctggtcgcgcaccaacgagcgcgtcgccaaggcgatgatggacacc
atcggcaccgagaaggtcaccaatgccaagggcgagatcatcgaccagaagtcgatgaac
tcgctgtacatcatggccgactccggcgcgcgtggtagccaggcgcagatccgtcagctg
gccggcatgcgcggcctgatggcgcgtccggacggctcgatcatcgagaccccgatcaag
gccaacttccgcgaaggcctgaacgtgcaggagtacttcaactccacccacggcgcgcgc
aagggtctggccgataccgcgctgaagaccgccaactccggctacctgacccgccgcctg
gtcgacgtggcgcaggacgtggtcatcaccgagcccgattgcggcaccaccgaaggcctg
accatgaccccgatcgtggaaggcggcgacgtggtcgagccgttgcgcgaccgcgtgctc
ggccgcgtggtggccgaggacgtgttcctgccgggcaacgacgaggatccgatcgtcacc
cgcaacacgctgctcgacgagcagtgggtggccaagctggaagaggccggcgtgcagacg
ctgaaggtgcgctccacgatcacctgcgcctcctcgttcggcgtgtgcgcccgctgctac
ggccgggacctggcgcgcggccacctggtcaacatcggcgaagcggtcggcgtcatcgcc
gcgcagtcgatcggcgagccgggtacccagctgaccatgcggaccttccacatcggcggc
gcggcgtcgcgtgcggcggcggtggacaacatcacggtcaagaccaccggttcgatcaag
ttcaacaacctcaagtcggtcgagcacgccaacggttcgctggtggcggtgtcgcgttcg
ggcgaactgtcggtgctcgacggccatggccgcgagcgcgagcgctacaagctggcctac
ggcgccacgatcaccgcgaaggacggcgacgcggtcaaggccggccagtcggtcgccaac
tgggatccgcataaccacccgatcgtgtcggaagtggccggtttcatccgcttcatcgac
ttcatcgacggcgtcaccgtcatcgagaagaccgacgagctgaccggcctggcctcgcgc
gagatcaccgatcccaagcgccgcggcacccaggccaaggagctgcgcccgatcgtgcgc
atcgtcgacggcaagggcaacgacctgaccatcccgggcaccgatctgccggcgcagtac
ctgctgccgccgcgctcgatcgtcaacctgcaggacggtgcggcggtgggcgtgggcgat
gtggtcgccaagatcccgcaggaagcgtccaagactcgcgacatcaccggcggtctgccg
cgcgtggccgacctgttcgaagcgcgcaagccgaaggatccggcgatcctggccgagcgt
tcgggcatcatcagcttcggcaaggacaccaagggcaagcagcgcctgatcatcaaggac
accgatggttcggaacacgaagagctgatccccaagtatcgccagatcatcgtgttcgaa
ggcgagcacgtggccaagggcgagaccgtggtcgacggcgagccgagcccgcaggacatc
ctgcgcctgctcggcgtggagccgctggccgcctacctggtcaaggaaatccaggacgtg
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtcatcacccggcagatg
ctgcgcaaggtcgagatcaccgaccagggcaacagcaagttcctcaacggcgagcaggcc
gagcgccagcgcgtcatcgaggaaaacgcccgcctgggcaaccgcaacgagctgccggcc
aagtacgacccggtgctgctgggcatcaccaaggcctcgctggccaccgagtcgttcatc
tccgcggcctcgttccaggagaccacccgcgtcctcaccgaggcggcggtccgcggcacc
agcgatacgctgcgcggcctgaaggaaaacgtgatcgtcggccgcctgatcccggccggc
accggcctggcctaccacagcctgcgccggcgcaactccagcggcctgaccgagtcggag
atgcagaccctgtccggcggcaacgccgagccggcggtcgaaacgcccgcaccggcggct
gccagcagcgaagagtga
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integrated database retrieval system
