Xanthomonas hyacinthi: FZ025_06690
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Entry
FZ025_06690 CDS
T06345
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xhy
Xanthomonas hyacinthi
Pathway
xhy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FZ025_06690 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhy03019
]
FZ025_06690 (rhlB)
Enzymes [BR:
xhy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FZ025_06690 (rhlB)
Messenger RNA biogenesis [BR:
xhy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FZ025_06690 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhlB
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QGY76371
LinkDB
All DBs
Position
complement(1459674..1461449)
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AA seq
591 aa
AA seq
DB search
MSDKPLTDVTFSAFELQPALLAGLEGAGFTRCTPIQALTLPVALPGRDVAGQAQTGTGKT
LAFLVTVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYG
GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPS
DEEKLTLLLGLLSRSEGARTMVFVNTKAFVERVARSLERHGYRVGVLSGDVPQKKRETLL
NRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMSLPDIEAYIEQKIPVEPVTAELLVALPRTPRAAVEGETAEVDADADESIGDIF
REARAQREADEQRRGGGSSRGKPGAGRSGPAGAGGRGEARSADGKPRRPRTPRPAEAEAV
PDAVAEAAAVVATEAVAAVAAATPRPARAAAEDAPAVDGARTPRKRRRRRGGRPLEGAEG
AAAGATSNAPAKPVQVRAARQGERAAAPAAAANDSFLTRLGRKLRSLVSGS
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaccgctgaccgatgtgactttttccgcgttcgagctgcaaccggcgctg
ctggccggactcgaaggcgccggcttcacccgctgcacgccgatccaggcgctgaccctg
ccggtggccctgccgggccgcgacgtggccggccaggcccagaccggcaccggcaagacc
ctggcgttcctggtgacggtgatgaaccgtctgctcagccgcccggcgctggccgaccgc
aagcccgaggatccgcgcgcgctgatcctggccccgacccgcgaactggcgatccagatc
cacaaggacgcggtcaagttcggcgccgacctgggcctgcgcttcgcgctggtctacggc
ggcgtggactacgacaagcagcgcgagctgctgcagcagggtgtggatgtgatcatcgcc
accccgggccggctgatcgactacgtcaagcagcacaaggtggtgtcgctgcacgcctgc
gagatctgcgtactcgacgaagccgaccgcatgttcgacctgggcttcatcaaggacatc
cgcttcctgctgcggcgcatgcccgagcgcggcacccggcagaccctgctgttctcggcc
acgctcagccaccgcgtgctggagctggcctacgagcacatgaacgagccggaaaagctt
gtggtcgagaccgagaccatcaccgccgcgcgcgtgcgccagcgcatctacttcccctcc
gacgaggagaagctgaccctgctgctgggcctgctgtcgcgcagcgagggcgcgcgcacc
atggtgttcgtcaacaccaaggccttcgtcgagcgcgtggcgcgttcgctggagcgccac
ggctaccgggtcggcgtgctgtccggcgacgtgccgcagaagaagcgcgagaccctgctc
aaccgcttccagaagggccagctggagatcctggtcgccaccgacgtggccgcgcgcggc
ctgcacatcgacggcgtcaagtacgtctacaactacgacctgccgttcgacgccgaggac
tacgtgcaccgcatcggccgcactgcgcggctgggcgaggaaggcgacgcgatcagcttc
gcctgcgagcgctatgcgatgagcctgccggacatcgaggcctacatcgaacagaagatc
ccggtcgagccggtcaccgccgaactgctggtggcgctgccgcgcaccccgcgcgcggcg
gtcgagggcgagaccgccgaggtcgatgcggatgccgacgaaagcatcggcgacatcttc
cgcgaggcgcgtgcgcagcgcgaggccgacgagcagcggcgcggcggcggcagcagccgc
ggcaagcccggcgctggccgcagcggccctgccggtgccggcggccgcggcgaagcgcgc
agtgccgacggcaagccgcggcgcccgcggacgccgcgcccggccgaggccgaggcagtg
ccggacgccgtcgcggaagcggctgccgtcgtcgccaccgaagccgtggcagcggtcgcg
gcggccacgcccaggccggcccgcgcggccgccgaagacgcgcctgcggtggatggcgcg
cgcacgccgcgcaagcgccggcgtcgtcgcggcggccggccgctggaaggtgccgagggt
gcggccgcaggcgcgaccagcaacgcgccggccaagccggtgcaggtcagggctgcgcgc
cagggcgagcgtgccgcggcgccggccgccgcagcgaacgattcgttcctgacccgcctc
ggccgcaagctgcgttcgctggtctccggctcctga
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