Xanthomonas hyacinthi: FZ025_07280
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Entry
FZ025_07280 CDS
T06345
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
xhy
Xanthomonas hyacinthi
Pathway
xhy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xhy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FZ025_07280 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xhy03400
]
FZ025_07280 (recB)
Enzymes [BR:
xhy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
FZ025_07280 (recB)
DNA repair and recombination proteins [BR:
xhy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FZ025_07280 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QGY76480
LinkDB
All DBs
Position
complement(1603572..1607384)
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AA seq
1270 aa
AA seq
DB search
MSATLGDDPYLSLPLHGVRLIEASAGTGKTFTLATLFTRLVVERGLRIGQILAVTFTEAA
TQELRRRIRERLALAATLVPEAAFPVDGIPLVGGASAPTGLTEDASTAKFLTDTPDATLT
RTILATHLATAQETPAALRRRLQQAVEEIDLAAIFTIHGFCARVLREHALESGQTFAAPE
LLANDRDLLGEVAADLWRQRAADAAMADDLVALWPGGPDALASDLRQLVRHPQLLPAAPA
LADDVAAATQQVQDAAAALATAFHAHGTVFFEAIAAAIEDGVLSKVSYKPEWLASLWHWC
EGFAVAPAAGLPPHAKLIKLSAAELASGTNKKCVGRTPASPMSHEVVGYLAALARLEEAR
ARRRIRLLHALRGDAVVRLALLKRQRRVQTYDDLVDGVAHALRPDGPQAEALARRLRAQY
AIALVDEFQDTDDRQWSIFSNVFGEGALAREAGLEPALFVIGDPKQAIYGFRGGDVQTYL
AAAADAEPAPPLGHNFRSRPALLAAIDALYAQAGYAQAFLTDGIAFHPVQPGSKRRDAEL
QRDGATAPALTLWRAPEPPPPPAASAAKNKSAGKPKPWSAGRARALCTAACVAAIRDWLA
DARAGTASVAGRTVQAGDIAVLVRSHGEAIRIQQALGAVGIPAVAAGKQSLFATDEALEL
LTLLQALLDPGDDSRLRAALATLLIGEDAAAIAALEHNGDQHRSWQQQALDWRERWQRGG
PLALIGDLGAAHAQRLLALVDGERRLTNYLQLAETLQEADTRALGTHGLVDWLARRIANA
DDNDETQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYVGIGRSDRGAGRHCVVHAPPLG
RQLHWNTGKDDPAWSAAEAAWKQEQRAEDARLLYVGLTRAEHALWIATGPFHQHERTALA
AMVGDPDALQAAAGEGAIAIDTTPPPASLPRLPPAADVQVPPARIPQRHVVADWWVYSFT
QLANADAGAAADPMASATVVGSGGSDEPSTSEAVATTLDVEAFDRRFTGNRFGVAMHDVF
ERCDFAAWRDWVPGQPAPDGQTAALIEALQRGGYAQDELEDGAAMLTALVGHTLTVALPE
GTRLAAVPAAQRRNEMEFHFAMRPTRVDALLALLHRFGVVGERQAFGARQRLEGLMTGLI
DLTYQHDGRWYVLDYKSNRLPSYDADALVRAMAHSEYALQALIYTVALHRWLRFRLGETY
DYARDFGGVRYLFCRGLDATRDPSPGVHAWRFDPDLVESVDALFAGALTPLSPRERGWGE
GTPAHGASTS
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgacgctcggcgacgacccgtacctgagcctgccgctgcacggcgtgcgcctg
atcgaggccagcgccggcaccggcaagaccttcaccctggccacgctgttcacccggctg
gtggtcgagcgcggcctgcgcatcggccagatcctggcggtcaccttcaccgaagccgcc
acccaggaactgcgccggcgcatccgcgagcgcctggcgctggccgcgacgctggtgccc
gaggcagcattccctgtcgatgggattccccttgtgggaggggcttcagccccgacgggc
cttaccgaggacgcctcgacagcgaagttcctcacggacactcccgacgccaccctcacc
cgcaccatcctcgccacccatctggccaccgcgcaggaaacccccgccgccctgcgccgc
cgcctgcagcaggccgtggaggaaatcgacctcgccgccatcttcaccatccatggcttc
tgcgcgcgggtgctgcgcgagcacgcgctggagagcggccagaccttcgccgcgccggag
ctgctggccaacgaccgcgacctgctcggcgaagtcgccgccgacctgtggcgccagcgc
gccgccgacgcggcgatggccgacgacctggtcgcgctatggccgggtggacccgacgcg
ctggccagcgacctgcgccagctggtgcggcatccgcaactgctgccggcggcaccggcg
ctggccgacgatgtcgccgcggccacgcagcaggtgcaggacgcggccgccgcgctcgcc
accgcgttccacgcgcacggcaccgtttttttcgaagcgatcgccgccgccatcgaagac
ggcgtgctgagcaaggtcagctacaagccggaatggctggcatcgctgtggcattggtgc
gaaggcttcgccgtcgcgcctgcggccggcctcccgccgcatgccaagctgatcaagctc
agcgctgcggaactggcgtccggcaccaacaagaaatgcgtcgggcgcacgccggcctcg
ccgatgagtcatgaagtcgtcggctatctggccgcgctggcgcggttggaggaagcgcgc
gccaggcgccgcatccgcctgctgcacgcgctgcgcggcgacgcggtcgtgcggctggcc
ttgctcaagcgccagcgccgcgtgcagacctacgacgacctggtcgatggcgtcgcgcac
gcgttgcggcccgacggtccgcaggccgaagcgctggcgcggcggctgcgcgcgcaatac
gccatcgccctggtggacgaattccaggacaccgacgaccgccagtggtcgatcttctcc
aacgtgttcggcgaaggcgcgctggcgcgcgaggcgggactggagccggcactgttcgtg
atcggcgatcccaagcaggcgatctacggcttccgcggcggcgacgtgcagacctacctg
gccgcggccgccgatgccgaaccggcgccgccgctcggccacaacttccgctcgcgcccc
gcgctgctggcggcgatcgacgcgctgtacgcgcaggccggttatgcgcaggcgttcctg
accgacggcatcgccttccatccggtgcagccgggcagcaagcgtcgcgatgccgagctg
cagcgcgatggcgccaccgcgccagcgctgaccctgtggcgcgcgccggagccgccgccg
ccgccggccgcgtctgcggccaaaaacaagtccgcaggcaagcccaaaccctggagcgcc
ggccgcgcgcgcgcgctgtgcaccgccgcctgcgtcgccgcgatccgcgactggctggcg
gatgcccgcgccggcaccgccagcgtcgccgggcgcacggtgcaggccggcgacatcgcg
gtgctggtgcgcagccacggcgaggccatccgcatccagcaggcgctgggcgcggtcggc
attcccgcggtggccgccggcaagcagagcctgttcgccaccgacgaagcgctggaactg
ctgaccctgctgcaggcgctgctcgacccgggcgacgacagccgcctgcgcgcggcgctg
gcgacgctgctgatcggcgaggacgccgccgcgatcgccgcgctcgaacacaacggcgat
cagcaccgcagttggcagcaacaggcgctggactggcgcgagcgctggcagcgcggcggc
ccgctggcgctgatcggcgacctcggcgccgcgcatgcgcaacgcctgctggcattggtc
gatggcgagcgccgcctgaccaactatctgcagttggccgaaacgctgcaggaggccgac
acccgcgcgctcgggacgcacggcctggtcgactggctggcgcggcgcatcgccaatgcc
gacgacaacgacgagacccagcaactgcgcctggaatcggatgcgcggcgggtgcagatc
gtgaccctgcacaagagcaagggcctggagtatccgctggtgttcctgccttacgtcggc
atcggccgcagcgaccgcggcgccggccgccactgcgtcgtgcacgcgccgccgctcggc
cgccaactgcactggaacacaggcaaggacgacccggcctggagcgccgccgaggcggca
tggaaacaggaacagcgcgccgaggacgcacgcctgctctacgtcggcctgacccgcgcc
gagcacgcactgtggatcgccaccggtcccttccaccagcacgaacgcaccgcgctggcg
gcgatggtcggcgacccggatgcattgcaggcggccgcaggcgagggcgcgatcgccatc
gacaccaccccgccgccggccagtctgccgcgcctgccgcctgccgccgacgtgcaggtg
ccgccggcgcgcatcccgcagcgccacgtcgtggcggactggtgggtgtacagcttcacc
cagctggccaacgccgatgccggcgccgccgccgacccgatggccagcgccaccgtggtc
ggcagcggcggcagcgacgagccgtccaccagcgaggccgtcgcgacgacgctggacgtg
gaagcgttcgaccgccgcttcaccggcaaccgcttcggcgtggccatgcacgacgtgttc
gaacgctgcgacttcgccgcctggcgcgactgggtccccggccaaccggcaccggacggg
cagaccgcggcgctgatcgaagccctgcagcgcggcggctacgcccaggacgaactggag
gatggcgccgccatgctcaccgccctggtcggccacaccctcaccgtcgcgctgccggaa
ggcacccgcctggccgcggtgcccgcagcgcagcgccgcaacgaaatggagttccacttc
gccatgcggcccacccgcgtcgatgcgctgctggccctgctgcaccgcttcggcgtggtc
ggcgagcgccaggccttcggtgcgcgccagcgcctggaaggcctgatgaccggcctgatc
gacctcacctaccagcacgacgggcgctggtacgtgctcgactacaaatccaaccgcctg
cccagctacgacgccgacgcgttagtgcgggcgatggcgcacagcgaatacgcactgcag
gcgctgatctacaccgtcgcgctgcaccgctggctgcgtttccgcctgggcgaaacgtac
gactacgcccgcgacttcggcggcgtgcgctacctgttctgccgcggcctcgacgccacc
cgcgacccctcgccaggcgtccacgcctggcgcttcgaccccgatctggtcgagtccgtc
gacgccctgttcgccggcgccctaacgcccctctccccccgggaaaggggttggggtgag
ggtacgccggcacatggagcgtccacctcatga
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