Xanthomonas hyacinthi: FZ025_15635
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Entry
FZ025_15635 CDS
T06345
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xhy
Xanthomonas hyacinthi
Pathway
xhy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FZ025_15635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhy03019
]
FZ025_15635
03009 Ribosome biogenesis [BR:
xhy03009
]
FZ025_15635
Enzymes [BR:
xhy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FZ025_15635
Messenger RNA biogenesis [BR:
xhy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FZ025_15635
Ribosome biogenesis [BR:
xhy03009
]
Prokaryotic type
rRNA helicases
FZ025_15635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
adh_short
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QGY77992
LinkDB
All DBs
Position
3539271..3541277
Genome browser
AA seq
668 aa
AA seq
DB search
MSQDTPAPLLFADLGLSPAVMKAVADIGYESPSPIQAATIPALLTGRDLLGQAQTGTGKT
AAFALPILSRLDFNQRKPQALVLAPTRELAIQVAEAFHRYAGAIPGFQVLPVYGGQPYVQ
QLSALKRGVHVVVGTPGRVIDHLERGTLDLSELRTLVLDEADEMLRMGFIDDVEAVLKKL
PASRQVALFSATMPTAIKRIAQTYLNDPAEVIIASKTTTSANVRQRYWAVSGLHKLDALT
RILEVEPFDAMIVFARTKAATDELAQKLQARGLAAAAINGDIQQSQRERVIQQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPREKGML
RAIERATRQPIEEMQLPSVDAVNDQRVTRFMEKISETIASGGIDTYRDLLQRFETEKNVP
MVEVAAALARLLQGDTPLLLAPERARAPQGERFERPGAERRERADRGERTERPKFEPKFD
REARPPRRDEGARAPRAPRPAAAAQGPDFDYQRDVGSFEAPRRDKAPKAPRGEPEVGMES
YRIEVGHQHGVKPANIVGAIANEAGLESKYIGRIDIHDDHSVLDLPADMPRELLTHLKKV
WVSGQQLQMRRLDGDDAGAGTPFKPKFARAAGKPGGRPNAAGPRPAGAATRIADRAGERP
PRKGPPKR
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagatacccccgcgccgctgctgttcgcagatctcggcctctcgcctgctgtg
atgaaggccgtggccgatatcggctacgagtccccgtcgccgatccaggccgccaccatc
cccgcgctgctgaccggccgcgacctgctcggccaggcccagaccggtaccggcaagacc
gccgcgttcgcgctgccgatcctgtcgcggctggacttcaaccagcgcaagccgcaggcg
ctggtgctggcgccgacccgcgagctggcgatccaggtcgccgaggcgttccatcgctac
gccggcgcgatccccggcttccaggtgctgccggtgtacggcggccagccctacgtgcag
cagctgtcggcgctcaagcgcggcgtgcacgtggtggtgggcacccccgggcgggtcatc
gaccacctcgagcgcggcaccctggacctgtccgagctgcgcacgctggtgctcgacgag
gccgacgagatgctgcgcatgggcttcatcgacgacgtcgaggcggtgctgaagaagctg
ccggcctcgcgccaggtggcgctgttctcggcgaccatgccgaccgcgatcaagcgcatc
gcgcagacctatctgaacgatccggccgaagtcatcatcgcctccaagaccaccacgtcg
gcgaatgtccgccagcgttactgggcggtcagcggcctgcacaagctcgatgcgctgacc
cgcatcctggaagtggaaccgttcgacgcgatgatcgtgttcgcgcgtaccaaggcggcc
accgacgagctggcgcagaagctgcaggcgcgcggcctggccgctgcggcgatcaacggc
gacatccagcagtcgcagcgcgagcgggtgatccagcagctcaaggacggcaagctcgac
atcctggtcgccaccgacgtggccgcgcgcggcctggacgtggagcggatcagccacgtg
ctgaactacgacatcccgtacgacaccgaaagctacgtgcaccgcatcggccgcaccggc
cgcgccggccgcagcggcgaggcgatcctgttcgtcagcccgcgcgagaagggcatgctg
cgcgcgatcgagcgcgccacccggcagccgatcgaagagatgcagctgccgagcgtggac
gcggtcaacgaccagcgcgtgacccgcttcatggagaagatcagcgagaccatcgccagc
ggcggcatcgacacctaccgcgatctgttgcagcgcttcgagaccgagaagaacgtgccg
atggtcgaagtggccgcggcgctggcgcgcctgctgcagggcgacacgccgctgctgctg
gcgccggagcgcgcccgcgcgccgcagggcgagcgtttcgagcggcccggcgccgagcgc
cgcgagcgcgccgaccgcggcgagcgcacggagcgtcccaagttcgagccgaagttcgac
cgcgaggcgcgcccgccgcgccgcgacgagggcgcgcgcgcgccgcgtgcgccgcgtccc
gcggcggccgcgcagggaccggacttcgactaccagcgcgacgtcggcagcttcgaggcg
ccgcgccgcgacaaggcgccgaaggcgccgcgcggcgagccggaagtgggcatggagagc
taccgcatcgaggtcggccaccagcacggggtcaagccggccaacatcgtcggcgcgatc
gccaacgaggccggcctggagagcaagtacatcggccgcatcgacatccacgacgaccat
tcggtgctggacctgccggcggacatgccgcgcgagctgctgacccacctgaagaaggtc
tgggtctccggccagcaactgcagatgcgcaggctcgacggcgacgatgccggcgccggc
acgccgttcaagccgaagttcgcgcgtgccgccggcaagcccggcggccgaccgaacgcg
gccggtccgcgcccggccggcgccgccacgcgcatcgccgaccgcgccggcgagcgcccg
ccgcgcaagggtccgccgaagcgctga
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