Xanthomonas hyacinthi: FZ025_16365
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Entry
FZ025_16365 CDS
T06345
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
xhy
Xanthomonas hyacinthi
Brite
KEGG Orthology (KO) [BR:
xhy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xhy03009
]
FZ025_16365 (rlmD)
Enzymes [BR:
xhy01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FZ025_16365 (rlmD)
Ribosome biogenesis [BR:
xhy03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FZ025_16365 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
PCMT
MTS
Methyltr_RsmB-F
RrnaAD
Methyltransf_11
Cons_hypoth95
TRM5-TYW2_MTfase
UPF0020
Methyltransf_23
Methyltransf_12
Methyltransf_15
TRAM
CMAS
PrmA
Ubie_methyltran
Methyltransf_32
Motif
Other DBs
NCBI-ProteinID:
QGY78129
LinkDB
All DBs
Position
3712170..3713522
Genome browser
AA seq
450 aa
AA seq
DB search
MARTRNRLDRSPFQTEIADLSHDGRGVARPEGEGGKVAFVTGALPGETVLAEPTARNRHF
DEARTLQVLQASPQRVAPRCPHFGVCAGCVLQHLAEDQQILAKQRVLTENLERIGHVTPQ
TVLPALSGAPWGYRRKGRFSVRRVEKKDKTLVGFRELDPRFVADLSVCHTVIPQIGFKVS
ALAELVESLDGKRDIPQIEFIAGDDAVALTFRHMQPLSAHDQAALVAFAQAHDFAIFLQP
GGVDSVHPLYPQKVPLSFRLPQWDVELAFRPLDFIQVNASLNQKMIAHALALLDAQPGDR
VLDLFCGLGNFTLPLARTVREVVGVEGDAGLVARARDNAQRNGLDNAQFFAADLTQDQRQ
APWMQQGFDKLLLDPPRSGAIEVLRQLPLESFQRIVYVSCHPGSLARDAGYLVNERGFVL
KAAGAMDMFPHTAHVESIAVFEKPGVGNGE
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
gtggcccgaaccagaaaccgcctagaccgcagcccgttccagaccgagatcgccgacctc
agccacgacggccgcggcgtcgcccgccccgagggcgagggcggcaaggtcgccttcgtc
accggcgcgctgcccggcgagacggtcctcgccgaacccaccgcgcgcaaccgccatttc
gacgaggcgcgcaccctgcaggtgctgcaggcctcgccgcagcgggtcgcgccgcgctgc
ccgcatttcggggtctgcgccggctgcgtgctgcagcacctggccgaggaccagcagatc
ctggccaagcagcgggtgctgaccgagaacctggagcggatcggccacgtgaccccgcag
acggtgctgccggcgctgtccggcgcgccctggggctaccggcgcaagggtcggttctcg
gtacgccgggtggagaagaaggacaagaccctggtcggcttccgcgagctcgatccgcgc
ttcgtcgccgacctgtcggtgtgccacacggtgattccgcagatcggcttcaaggtgagc
gcgctggccgagttggtcgagagcctggacggcaagcgtgacatcccgcagatcgaattc
atcgccggcgacgacgccgtggcgctgaccttccgccacatgcagccgctcagcgcgcac
gaccaggcggcattggtggcgttcgcccaggcccacgacttcgccatcttcctgcaaccc
ggcggcgtggacagcgtgcatccgttgtacccgcagaaggtgccgttgtcgttccggctg
ccgcaatgggacgtggaactggcgttccggccgctggacttcatccaggtcaacgcctcg
ctcaaccagaagatgatcgcgcacgcgctggcgctgctcgacgcgcagcccggcgaccgc
gtgctcgacctgttctgcgggctgggcaacttcaccctgccgctggcgcgcacggtgcgc
gaggtggtgggcgtggaaggcgatgcggggctggtggcgcgggcgcgcgacaacgcgcag
cgcaacggcctggacaacgcgcagttcttcgccgccgacctgacccaggaccagcgccag
gcgccgtggatgcagcagggcttcgacaagctgctgctcgacccgccgcgctccggcgcg
atcgaggtgctgcggcagctgccgttggagagcttccagcgcatcgtctacgtcagctgc
caccccggctcgctggcgcgcgacgccggctacctggtcaacgagcggggcttcgtgctg
aaggccgccggcgcgatggacatgttcccgcatacggcgcatgtggagagcatcgcggtg
ttcgagaagccgggagtcgggaatggggaatag
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