Xanthomonas hyacinthi: FZ025_18520
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Entry
FZ025_18520 CDS
T06345
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xhy
Xanthomonas hyacinthi
Pathway
xhy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FZ025_18520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhy03019
]
FZ025_18520
03009 Ribosome biogenesis [BR:
xhy03009
]
FZ025_18520
Enzymes [BR:
xhy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FZ025_18520
Messenger RNA biogenesis [BR:
xhy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FZ025_18520
Ribosome biogenesis [BR:
xhy03009
]
Prokaryotic type
rRNA processing factors
FZ025_18520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QGY78533
LinkDB
All DBs
Position
complement(4196971..4200510)
Genome browser
AA seq
1179 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEY
GGERHGFLPLKEISRDYFQAGVDHNKATIRELLREGQEVVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQVWKSIAEAALAKPAPFLIYQESRLIIRALRDYLRADIGEILVDTVEMYGDAQ
EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEAAYERSVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENR
LQNALKYDRARVQIGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESMSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRRALSEIEKRHDAPIVIVADEQLHTPH
YEVTRLRENELGEESAKPSYQRNTPRKLPVHALTKAQLNIPAPAVTNVKHSQPAPVREVV
EVPEPVAAPVQIQAAAPAPVAAPAPTTGVVGWLKRIFGAGESTAPAPAASEPAQRQRAHD
GNRNRNDRGDRNARRDGNRNGGQGGNGGNAARGNGGNLRRDERRPGNGGSNPQGGQQNLA
AKPPRNEQAPQQVKPQQNPPPPPKVPKQPQPQNPPRQPKPQQEPAQAALQSDKPQRQPRQ
DEVAAKPATAAAAAATQDATTLAAATVAAGAAALSSDAPASEVDSAAPAPAAPQPSVAQA
SIDERESVAETAQAVPAGENGDADDANGEAGGRRRRGRRGGRRRRRGNGEAGSGGEGAAF
DDIELDAGDSDGETAPAPSRSQPEFDFVDDASPAEATETTEAKPQQAPRAAREKREPRPP
RHEQAAAAQTPAAAAPSVPEAETGPAAAQAAPVAAAAVAATATAPAVAESAPAPVATAPA
QAAPPVAAAPLPPANGVPAAQVEAVPAEEPARPFVAGPAASDTPPLATIEAARQPTTPTP
IVERPAPIAAATPAAETKTETAAAPLAAVEEPATPSPVVAEPQQAAAPAAQPIAEEEAPG
KPAYVPVQTTLLDAFHEEPAAEPTPLHAPVAAVPVSNGTGSSSAGTAEPAAAAAAGNGLF
DAPPAPPADAPVAVAQHQLHAKSGEGESDDDKGHKERAS
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgccacgcaggcggaagaactgcgtgtggccatcgtggac
ggccagaccctgtacgacatcgatatcgagcaaccgtccaaggaacagaagaagtccaac
atctacaagggccgcatcacgcggctcgaaccctcgctcgaagccgccttcgtcgaatac
ggcggcgagcgccacggcttcctgccgctgaaggaaatctcccgcgattacttccaggcc
ggcgtcgaccacaacaaggcgacgatccgcgaactgctgcgcgagggccaggaggtggtg
gtccaggtggacaaggaagaacgcggcaacaagggcgccgcactgaccacgttcatctcc
ctggccggccgctacatggtgctgatgccgaactcgcccagcgccggcggcgtctcgcgc
cggatcgagggcgaggaccgcgccgcgctgaaggaagcgctggacaagctgaacatcccc
gacgacatgggcgtgatcatccgcaccgccggcgtcggccgcgatgccgaagagctgcag
tgggacctggactacctgctgcaggtatggaagtcgatcgccgaggccgcgctggccaag
ccggcaccgttcctgatctaccaggaatcgcggctgatcatccgcgccctgcgcgactac
ctgcgcgccgacatcggcgagatcctggtcgataccgtcgagatgtacggcgatgcccag
gagttcatgcagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgac
atcccgctgttcaaccgcttccagatcgaatcgcagatcgaggcggcctacgagcgcagc
gtgcgcctaccctccggcggctcgatcgtggtcgaccagaccgaggcgctgaccgcggtg
gacgtcaactcctcgcgcgcgaccaaaggcagcgacatcgaggacaccgcgttccagacc
aacctggaggccgccgaagaggtggcccgccagctgcgcctgcgcgacctcggcggcctg
gtggtcatcgacttcatcgacatggcctccaacaagcaccagcgcgaagtcgagaaccgc
ctgcagaacgcgctcaagtacgaccgcgcgcgggtgcagatcggccgcatctcgcgcttc
ggcctgctcgagatgagccgccagcgcctgcgcccgtcgctgggcgagtccagccagatc
gtgtgcccgcgctgcgacggccatggccgcatgcgcagcgtcgagtcgatgtcgctgtcg
atcatccgcgtggccgaagagcacgcgatgaaggagaacaccggacaggtactggtgcag
gccccggtggagatcgccaactacctgctcaacgagaagcgccgcgcgctcagcgagatc
gagaagcgccacgacgcgccgatcgtcatcgtcgccgacgaacagctgcacaccccgcac
tacgaagtgacccgcctgcgcgagaacgagctcggcgaggaaagcgccaagcccagctac
cagcgcaacaccccgcgcaagctgccggtgcatgcgctgaccaaggcgcagctgaacatt
ccggcgccggcggtgaccaatgtgaagcactcgcagccggcgccggtgcgcgaagtggtc
gaggtgcccgaaccggtcgccgcgcccgtgcagatccaggccgcggcgcccgccccggtc
gcggccccggccccgaccaccggcgtggtcggctggctgaagcggatcttcggtgccggc
gaaagcacggccccggctccggccgcgagcgagccggcgcagcgccagcgcgcccacgac
ggcaatcgcaaccgcaacgatcgtggcgaccgcaacgcgcgccgcgacggcaaccgcaac
ggcggccagggtggcaatggcggcaacgccgcgcgcggcaacggcggcaacctgcgccgc
gacgagcgccgtcccggcaacggcggcagcaacccgcagggcggccagcagaacctcgcg
gccaagccgccgcgcaacgagcaggcgccgcagcaggtcaagccgcagcagaacccgccg
ccgccgccgaaggtgccgaagcagccgcagccgcagaacccgccgcgtcagcccaagccg
cagcaggagccggcgcaggccgcgctgcagagcgacaagccgcagcgccagccgcgccag
gacgaggtcgccgccaagccggccacggcagcagccgccgcagcaacccaggacgccacc
acgctcgcggctgccaccgtggccgctggtgccgccgcgctgagcagcgatgcaccggcc
agcgaggtcgacagcgccgcgccggcgccggccgcaccgcagccgagcgtggcgcaggcg
agcatcgatgaacgcgagagcgtcgcggaaaccgcgcaggccgttccggccggcgagaac
ggcgacgccgacgacgccaatggcgaggccggcggccgccgccgtcgcggccgtcgcggc
ggccgtcgccgtcgtcgcggcaatggcgaagccggcagcggcggcgaaggcgcagcgttc
gacgacatcgaactggatgccggcgacagcgacggcgaaaccgcgccggcgccgagccgc
agccagccggaattcgatttcgtcgacgatgcctccccggccgaagccaccgaaaccacc
gaagccaagccacagcaggcaccgcgcgcggcgcgggaaaagcgcgagccgcgtccgccg
cggcacgagcaggctgctgccgcgcagacgcctgccgctgctgcgccctcagtaccggaa
gccgaaaccggccccgccgcagcgcaagctgcgccggttgccgcagccgcggtcgcagcg
accgcaacggcgcctgcggttgccgagtcggcaccggcaccggtcgctacagcgcctgcg
caagcagcgccgccggtagcggctgcgcccttgccgccagccaacggcgtgcctgccgcg
caggtcgaggcagtgcctgcagaagaacctgctcggccgttcgtcgccgggccggcagcg
tccgacacgccgccgctggcgacaatcgaagccgcgcggcaaccgacgaccccgacgcca
atcgtcgaacggcctgctccgatcgccgcagcgacgccagcggcggaaacgaaaacggaa
actgcagcggcaccgctcgcagcagttgaggaacctgcaacgccgtccccggtggttgcc
gagccgcagcaagcagccgctccggcagcgcaaccgatcgccgaggaagaagcgcccggc
aaaccggcctacgtgccggtacagaccacgctgctggacgccttccacgaggagccggcg
gccgaaccgacgccgctacacgcgccggttgcagcagtcccggtgtcgaacggcaccggg
agcagcagcgccggcactgccgaaccggcagcggccgctgcggccggcaacggcctgttc
gatgcgccgcctgcaccgccggcggatgcgccggtcgccgtcgcccagcatcagctgcac
gccaaatccggcgagggcgagagcgacgacgacaaggggcacaaggaacgcgccagctga
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