Xanthomonas hyacinthi: FZ025_18940
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Entry
FZ025_18940 CDS
T06345
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
xhy
Xanthomonas hyacinthi
Pathway
xhy03410
Base excision repair
xhy03430
Mismatch repair
xhy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xhy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FZ025_18940 (recJ)
03430 Mismatch repair
FZ025_18940 (recJ)
03440 Homologous recombination
FZ025_18940 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xhy03400
]
FZ025_18940 (recJ)
DNA repair and recombination proteins [BR:
xhy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
FZ025_18940 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
FZ025_18940 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FZ025_18940 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QGY78608
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Position
4291162..4292892
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AA seq
576 aa
AA seq
DB search
MSPPLRITRRPAAEGGPWTDGVLPLLRRIYTARGAHDASLAQPKLAQLLPPDALSGIDAA
VALLAAAIAAGKRILVVGDFDCDGATACAVAVRGLRLLGAAQVLHAVPNRMVHGYGLSPA
LVAELAPLQPELLVTVDHGIACHAGVAAAKALGWQVLVTDHHLPGSVLPPADAIVDPNLA
GDAFPSKMLAGVGVIFYVLLALRRHLRERDAFAALAPDLSVLLDLVAVGTVADLVPLDAN
NRALVSAGLRRLQRGDGCVGLRALIEASGRDPARLSAGDIGFALAPRLNAAGRLEDMALG
IELLLCEDPQQARAIAATLEQINGERRAVQQQMTDAAEATVAQALLAAPDAPPVAVCLFD
AQWHPGVIGLVASKMKDRLHRPVIAFAPAEPGSDQLRGSARSIPGFHIRDAMAAVDARRP
GLMDKFGGHAMAAGLSLPHAALAEFEQLFREHALASLDAALLQAELLSDGALDPHELDHR
HAEALRLAGPWGQGFPEPLFDGEFEVLQWRVLKERHLKLSLRCAGRDDALNAIHFNGWRG
SEPGRRVHIAYRLVADDYRGGEAVQLVVEHCRSLSG
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgagtccgccgctgcgcatcacccggcgcccggccgccgagggcgggccgtggacggac
ggcgtgctgccgctgctgcgccgtatctacaccgcgcgcggcgcgcacgacgccagcctg
gcgcagccgaaactggcgcagctgctgccgccggacgcgctcagcggcatcgacgcggca
gtcgccttgctggccgcggcgattgctgccggcaagcgcatcctggtggtcggcgatttc
gactgcgacggcgccaccgcctgcgcggtcgcggtgcgcggactgcgcctgctcggtgcc
gcgcaggtgctgcacgcggtgccgaaccgcatggtccacggctacggcctgtcgccggcg
ctggtcgccgaactggcgccgctgcagccggagctgctggtcaccgtcgatcacggcatc
gcctgccacgccggcgtcgccgcggccaaggcgctgggctggcaggtactggtcaccgac
caccacttgccgggcagcgtgctgccgccggccgacgcgatcgtcgatccgaacctggcc
ggcgacgcgttcccgagcaagatgctggccggggtcggggtgatcttctacgtgctgctg
gccttgcgccggcacctgcgcgagcgtgacgcattcgccgcgctcgcgccggacctgagc
gtgctgctggacctggtcgcggtcggcaccgtcgccgacctggtgccgttggacgccaac
aaccgcgcgctggtgtcggccggattgcgccgcctgcagcgcggcgacggctgcgtcggc
ctgcgcgccttgatcgaggccagcggccgcgatccggcacggctcagcgccggcgacatc
ggcttcgcgctggcgccgcggctcaacgccgccggccgcctcgaggacatggcgctgggc
atcgaactgctgctgtgcgaggacccgcagcaggcgcgcgcgatcgccgccacgctggaa
cagatcaacggcgagcgccgcgccgtgcagcagcagatgaccgacgcggccgaggccacc
gtggcgcaggcgctgctggccgcgccggatgcgccgccggtggcggtgtgcctgttcgat
gcgcagtggcatccgggcgtgatcggcctggtcgcctcgaagatgaaggaccgcctgcac
cgcccggtgatcgccttcgccccggccgaaccgggcagcgaccagttgcgcggctcggcg
cgctcgattcccggcttccatatccgcgatgcgatggcggcggtggacgcgcgccggccc
gggctgatggacaagttcggcggccatgcgatggccgcggggctgagcctgccccacgcg
gccttggccgagttcgagcagctgttccgcgaacatgcgctggccagcctggacgcggcg
ttgctgcaggccgaattgctcagcgacggcgcgctggacccgcacgaattggaccaccgc
cacgccgaggcgctgcgcctggccgggccgtgggggcagggcttccccgagccgctgttc
gacggcgaattcgaggtgctgcaatggcgcgtgctgaaggagcgccacctcaagctgagc
ctgcgctgcgccggccgcgacgacgcgctgaacgcgatccacttcaacggctggcgcggc
agcgaacccggccgccgcgtgcacatcgcctaccgcctggtcgccgacgactatcgcggc
ggcgaagcggtgcagttggtggtggagcactgccggagcttgtcgggctga
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