Xanthomonas hyacinthi: FZ025_18985
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Entry
FZ025_18985 CDS
T06345
Symbol
rpfB
Name
(GenBank) long-chain fatty acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
xhy
Xanthomonas hyacinthi
Pathway
xhy00061
Fatty acid biosynthesis
xhy00071
Fatty acid degradation
xhy01100
Metabolic pathways
xhy01212
Fatty acid metabolism
xhy02024
Quorum sensing
xhy04146
Peroxisome
Module
xhy_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
xhy00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
FZ025_18985 (rpfB)
00071 Fatty acid degradation
FZ025_18985 (rpfB)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
FZ025_18985 (rpfB)
09145 Cellular community - prokaryotes
02024 Quorum sensing
FZ025_18985 (rpfB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
xhy01004
]
FZ025_18985 (rpfB)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xhy04147
]
FZ025_18985 (rpfB)
Enzymes [BR:
xhy01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
FZ025_18985 (rpfB)
Lipid biosynthesis proteins [BR:
xhy01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
FZ025_18985 (rpfB)
Exosome [BR:
xhy04147
]
Exosomal proteins
Exosomal proteins of breast milk
FZ025_18985 (rpfB)
Exosomal proteins of breast cancer cells
FZ025_18985 (rpfB)
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
QGY78617
LinkDB
All DBs
Position
complement(4305519..4307204)
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AA seq
561 aa
AA seq
DB search
MSQERPWLQSYPAIIPAEVDVDEYRSVAAVFETSVAKFGDRPAYRNFGKTLTYREAGELA
RHFAAYLLGELQLRKGDRVALMMPNCLQYPIATFGVLLAGMTVVNVNPLYTPRELRHQLI
DSGASAIVVIDNFGKTVQEVLADTPLKQVITTGLGDMLGFPKGALVNFVLKYVKKLVPDY
DIPNAVRFRDTLTLGRLHTLPQLDIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMLQA
GAWLAATGKLEEGKEVIITALPLYHIFALTANGLVFMKLGGLNHLISNPRDMPGFVKELK
KTRFTAFTGVNTLFNGLLNTPGFEQVDFSALKFTLGGGMAVQRAVAERWKQVTGVTLVEA
YGLTETSPAACINPLTLKEYNGSIGLPIPSTDACVKDDQGQTLAPGEVGELCIKGPQVMK
GYWRRPEETTGAIDADGWLHTGDMARMDPQGFFYIVDRKKDMILVSGFNVYPNEVEDVIA
MMPGVLEVAAVGVPDEKSGEAVKVVIVKKDPNLTAEDVKAHARANLTGYKHPRIVEFRKE
LPKTNVGKILRRELRDSQPPA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaggaacgtccgtggttgcagagttatccggccatcattcccgccgaggtcgat
gtcgatgagtaccgatccgtcgccgcggtgttcgaaacctccgtcgccaagttcggcgac
cgtccggcctaccgcaacttcggcaagaccctgacctaccgcgaagccggcgaactggcc
cggcacttcgccgcctacctgctgggcgagttgcagctcaggaagggcgaccgcgtcgcg
ctgatgatgcccaactgcctgcagtacccgatcgccaccttcggcgtgctgctggccggc
atgaccgtggtcaacgtcaatccgctgtacacgccgcgcgaactgcgccaccagctgatc
gattccggcgccagcgcgatcgtggtgatcgacaacttcggcaagaccgtgcaggaggtc
ctggccgacaccccgctcaagcaggtcatcaccaccggcctgggcgacatgctcggcttc
ccgaagggcgcgctggtcaacttcgtgctgaagtacgtcaagaagctggtccccgactac
gacatccccaacgcggtgcgcttccgcgacacgctcaccttgggccgcctgcataccctg
ccgcagctggacatcgaacccgacgacatcgccttcctgcaatacaccggcggcaccacc
ggggtggccaagggcgcgatgctgacccatcgcaacctggtcgcgaacatgctgcaggcc
ggcgcctggctggcggcgaccggcaagctggaggaaggcaaggaagtcatcatcaccgcg
ctgccgctgtaccacatcttcgcgctgaccgcgaacggcctggtgttcatgaagctcggc
ggcctcaaccacctgatcagcaacccgcgcgacatgcccggcttcgtcaaggaactgaag
aagacccgcttcaccgccttcaccggggtcaacacgctgttcaacggcctgctcaacacg
cccggcttcgagcaggtggatttctcggcgctgaagttcaccctgggcggcggcatggcg
gtgcagcgcgccgtggccgaacgctggaagcaggtgaccggggtgaccctggtcgaggcc
tacggcctgaccgagacctcgccggccgcctgcatcaacccgctgacgctgaaggagtac
aacggctccatcggcctgccgattccgtccaccgacgcctgcgtcaaggacgaccagggc
cagaccctggcgcccggcgaggtcggcgagctgtgcatcaaggggccgcaggtgatgaag
ggctactggcgccgtcccgaggaaaccaccggcgcgatcgatgccgacggctggctgcac
accggcgacatggcgcggatggatccgcagggcttcttctacatcgtcgaccgcaagaag
gacatgatcctggtctcgggcttcaacgtgtacccgaacgaggtcgaggacgtgatcgcg
atgatgcccggcgtgctggaagtggccgcggtcggggtgccggacgagaaatccggcgag
gcggtcaaggtggtcatcgtcaagaaggaccccaacctcaccgccgaggacgtcaaggcg
catgcccgcgccaacctgaccggctacaagcacccgcgcatcgtcgagttccgcaaggaa
ctgcccaagaccaacgtcggcaagatcctgcggcgggaattgcgcgacagccagccgccg
gcctag
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