Xanthomonas hyacinthi: FZ025_19295
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Entry
FZ025_19295 CDS
T06345
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
xhy
Xanthomonas hyacinthi
Pathway
xhy02020
Two-component system
xhy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xhy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FZ025_19295 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FZ025_19295 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhy03021
]
FZ025_19295 (rpoN)
Transcription machinery [BR:
xhy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FZ025_19295 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_3
HTH_IclR
HTH_Crp_2
DUF5429
Phage_CII
LacI
HTH_AraC
HTH_23
Motif
Other DBs
NCBI-ProteinID:
QGY78678
LinkDB
All DBs
Position
complement(4379318..4380715)
Genome browser
AA seq
465 aa
AA seq
DB search
MKPTVSAQLGQQLHLTPQLLQSIRLLQLDGLQLELEIRRALETNPLLELEEPEGVLEPVV
DHDNALETAAFDELPESSMWDIPAAGWSEGEDDRMQRIAAGESTDPQLRVLQRLALELDE
SELEVAAFWLEHSDDAGYLDGALDTLTLLACARFDRTAAQVEAVRQRLLRGDPAGLAACD
LRECLSVQLAALPGRVAGRHLAARLLAGDLNLLASHDYPLLARQLDAEADDVREAVRLIL
SLQPRPGDSLLPENLGHVIPDVVAWHSDGTWRVALNPATTHRVTVNPMHERALAEAGEAA
APLREMLQEARWLTRGLSMRYETLLRTTRAIVERQAAFLVKGEEAMAPLTLKDVADAIGM
HESTVSRITTGKYLQTPRGTFELKHFFAVRLEGAAVSGQAVRAMVRRLIESEPAGRPLAD
EAIAGLLSRQGVNVARRTVAKYREQLDIAPARERRRARPLLARAG
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgaccgtctccgcccagctaggccagcaactccacctgactccgcaactgctg
cagtcgatccggctactgcaactggacgggctgcaactggaactggaaatccggcgcgcg
ctggaaaccaacccgctactggaactggaagagccggaaggcgtgctcgagccggtggtc
gaccacgacaacgcgctggaaaccgccgcgttcgacgaactgcccgaatcctcgatgtgg
gacatccccgccgccggctggagcgagggcgaagacgaccgcatgcagcgcatcgccgcc
ggcgagtccaccgatccgcaactgcgcgtgctgcagcgcctggcgctggaactggacgaa
tcggaactggaagtggccgcgttctggctggagcacagcgacgatgccggctatctcgac
ggcgcgctggacacgctgaccctgctcgcctgcgcacgtttcgaccgcaccgcggcgcag
gtggaagcggtgcgccagcggctgctgcgcggcgatcccgccggcctggccgcatgcgat
ctgcgcgaatgcctgagcgtgcagctggccgccctgcccggccgcgtcgccggccgccat
ctggccgcgcgcctcctcgccggcgacctgaacctgctcgccagccacgattacccgctg
ctggcgcgccagctcgatgccgaggccgacgacgtgcgcgaggcggtgcggctgatcctg
tcgctgcagccgcgtcccggcgacagcctgctgccggagaacctgggccacgtgattccc
gacgtggtcgcctggcacagcgacggcacctggcgggtggcgctgaacccggccaccacc
caccgcgtcaccgtcaatccgatgcacgagcgcgccctggccgaggccggcgaggcggcg
gcgccgctgcgcgaaatgctgcaggaggcgcgctggctgacccgcggcctgtcgatgcgc
tacgagaccctgctgcgcaccacccgcgccatcgtcgagcgccaggccgcgttcctggtc
aagggcgaggaagcgatggcaccgctgaccctgaaggacgtggccgacgcgatcggcatg
cacgaatccaccgtgtcgcgcatcaccaccggcaaatacctgcagacgccgcgtggtacc
ttcgaactgaagcatttcttcgccgtgcgcctggaaggcgccgcggtctcgggccaggcg
gtgcgcgcaatggtgcggcgcctgatcgaatccgagcccgcggggcgaccgctggccgac
gaggcgatcgccgggctgctgtcgcgacagggcgtgaacgtggccaggcgcaccgtggcc
aagtaccgtgaacaactggatatcgctcccgctcgcgaacgccgtcgcgccaggccgctg
ctggcccgcgcgggctaa
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