Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00014
Help
Entry
AMD24_00014 CDS
T04108
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii03410
Base excision repair
xii03430
Mismatch repair
xii03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AMD24_00014 (recJ)
03430 Mismatch repair
AMD24_00014 (recJ)
03440 Homologous recombination
AMD24_00014 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xii03400
]
AMD24_00014 (recJ)
DNA repair and recombination proteins [BR:
xii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AMD24_00014 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AMD24_00014 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AMD24_00014 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Flavodoxin_NdrI
Motif
Other DBs
NCBI-ProteinID:
ALJ56212
UniProt:
A0A0P0GH22
LinkDB
All DBs
Position
complement(19504..21204)
Genome browser
AA seq
566 aa
AA seq
DB search
MQRKWILPRATDMRSLDSVQSTFGLPACFVSLLLQRGLTGTASVESFLYPKLRSLSAPEL
LPDMSPAVERVDIAMRNGEKIVLYGDYDVDGIASLALISRILAAYRIRAECFLPRRTEEG
YGLTLAGIKRCFAEHRPDLLIAVDCGTNSAEEVAAVRRRGADVVILDHHEVHSRHPNCTA
LVNPKMGRDFHYLCSAGVAFKLAHALVKYHTIPGINLKDYLDIVALATVADLVPLIGENR
TLVKWGLKQMRTTRWAGLAALTQIAGVKASICSADIGFRLGPRINAAGRLGTAHQALALL
LSDDPEECIRLATDLNTRNCERQTVEKSVTREVEFWIEAHHDHTRNAAIIAGHQNWHSGV
LGIVASRIARRYHRPTLIIGFDGSGVGKGSGRSIEGFPLIKALRRCSNKLEGFGGHRMAA
GLTLLEANFKSFCTSFEEVAKSLITEEMLIPRLYLDAEVSAESLSHSLLEWQDQLEPFGS
SNPQPLFLLRQLQPVHSPHWMGNKQHLSLKLSSGRRQLEAVFFNAVGFCMPHPPWDVAFH
LDRNEFSKHPSFQLRIIDIRSSKGSL
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagaaagtggatccttcccagggcaacagatatgcgttccctcgacagcgtacag
agtacttttgggctgccagcctgttttgtctctctgctcttgcaaagaggactcacaggc
actgcttccgtggaaagttttctttatcctaagctccgatctctctctgctccagagcta
ttgccggatatgtcccccgctgtggaacgcgtggatattgcaatgcgcaacggtgagaag
atcgtgttgtatggagactacgatgtagatggtattgcctctctggcactcatttctcgc
atcctcgctgcctatcggataagagcagagtgctttttaccacggcgtaccgaagaagga
tatggtcttactcttgcaggtatcaagcggtgcttcgcagaacaccgtcctgaccttctc
attgcagtggactgtgggaccaactcggcagaagaggttgctgcagtccgtcgtcgtgga
gcagatgtagtgatcctcgatcaccatgaagtccattctaggcatcctaattgcacagca
ctggtcaatccaaaaatgggaagagactttcactatctctgtagtgcgggagttgcattt
aagctggcacatgcccttgtgaaatatcacaccattcctggcataaacctgaaagactat
ctagatattgttgccctagctactgtagcagacctcgttccgctcataggggagaaccgt
acccttgtgaagtgggggttaaaacaaatgagaactactcgttgggcagggttagcggca
ctcacgcagattgccggtgtcaaagcatcaatttgctctgccgacattggatttcgtctt
ggcccacgtatcaacgcagctggtcggttgggtactgcccatcaggctttagcactttta
ctttctgatgaccccgaggagtgtatcaggcttgcgacggacctcaacacacgaaattgt
gagcgacaaactgtagaaaagtctgttactcgagaagtggagttttggatagaagcgcat
catgatcacacccgcaatgccgccatcatcgcaggacatcaaaattggcatagcggcgtg
ctaggtatcgtggcgtcacgcattgcacggcgctaccatcgtcctactctcattataggg
tttgatggtagtggagtgggaaagggaagtggccgaagcattgaaggatttccgctcatt
aaggcattgcggcgctgttcgaataagttggaaggatttggcggccatcgaatggcagct
gggttgaccttgttggaagcaaactttaagagtttttgcacttcctttgaggaagttgca
aagagcctaattacagaggaaatgcttatcccacgtctatacctggatgcagaagtaagc
gctgaaagcctctcccattcattgttagaatggcaagatcagcttgaaccatttggatcc
tctaatccacaaccactcttccttcttcgtcagttacaacccgtccacagcccacattgg
atggggaataagcagcacctaagtctgaagctcagctctggccgtcgacaattagaagct
gttttcttcaatgctgttggattttgtatgccccatcccccatgggatgtagcgttccac
ctagatcggaatgaattcagtaagcatccttcttttcagcttcgcatcatagatataagg
tctagcaaaggatcgctgtaa
DBGET
integrated database retrieval system
