Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00030
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Entry
AMD24_00030 CDS
T04108
Symbol
icd
Name
(GenBank) Isocitrate dehydrogenase [NADP]
KO
K00031
isocitrate dehydrogenase [EC:
1.1.1.42
]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii00020
Citrate cycle (TCA cycle)
xii00480
Glutathione metabolism
xii00720
Other carbon fixation pathways
xii01100
Metabolic pathways
xii01110
Biosynthesis of secondary metabolites
xii01120
Microbial metabolism in diverse environments
xii01200
Carbon metabolism
xii01210
2-Oxocarboxylic acid metabolism
xii01230
Biosynthesis of amino acids
xii04146
Peroxisome
Module
xii_M00009
Citrate cycle (TCA cycle, Krebs cycle)
xii_M00010
Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
AMD24_00030 (icd)
09102 Energy metabolism
00720 Other carbon fixation pathways
AMD24_00030 (icd)
09106 Metabolism of other amino acids
00480 Glutathione metabolism
AMD24_00030 (icd)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
AMD24_00030 (icd)
Enzymes [BR:
xii01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.42 isocitrate dehydrogenase (NADP+)
AMD24_00030 (icd)
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GFIT
Motif
Pfam:
Iso_dh
Motif
Other DBs
NCBI-ProteinID:
ALJ56226
UniProt:
A0A0N7IE27
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All DBs
Position
complement(39578..40942)
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AA seq
454 aa
AA seq
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MYREGADIRAFLVLEWLIKFMTCKAFIASQGSKITVSRGKLVVPDCPIIPFIRGDGSGPD
IWAASERVFNAAVEKAYNGKRRVAWLEVCAGKTAREKFGDWLPKETVAAFQEYLVGIKGP
LSTPVGEGISSLNVALRQMLDLYVCLRPVRHFSKVPSPVKYPEKVDVVIFRENTEDIYAG
IEFKAGTAEANSVCRFLKSEFPTFFEKIRFGSKERGLEWARVAGLPSDLYKETEVGIGVK
PVSRAGTERLVRAAIQYAVDENRRSVTLIHKGNIMKFTEGAFRKWAYDLARREFGAIGIE
GSSWCRLPNGTVIKDVIADIALQQVLTRPEEFDVIATLNLNGDYLSDALAAQVGGIGIAP
GGNINYVTGHAIFEATHGTSPKYADLDRVNPGSVILSGEMMFRYLGWHEVADALVKGLNA
AIDTRRVTYDFARLMEDASEIRCSEFGDNIISHL
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
gtgtaccgagaaggagcggatatccgggcttttttagtgctggaatggctcataaaattt
atgacttgcaaagcgtttattgcatcacaaggtagcaagatcaccgtttctcgggggaaa
cttgttgtgcctgactgtcctattattccctttatccgcggggatggaagtggaccggat
atatgggccgctagcgagcgtgtatttaatgcagcagtggagaaagcttataacggcaaa
cgcagggttgcctggttagaggtttgtgctggaaaaacagctagggaaaaatttggcgac
tggcttcccaaagagacggttgcagcgtttcaagaatatcttgtaggtattaaggggcca
ctttccacacccgtaggagaaggcatttcttcactcaacgtcgcccttcgccaaatgtta
gacctctacgtttgtctgcgtcccgtgcggcacttttctaaagtgccttctccagtcaag
tatccagaaaaagtggatgtggtcattttccgtgaaaacacggaagacatttatgcaggt
attgaatttaaagccggtaccgctgaagctaattctgtgtgtaggtttctgaaatctgag
ttccccactttttttgaaaagatccgctttggatctaaggaacgagggttagaatgggct
agggttgcagggttgccttccgatctttataaggaaacagaagtgggtatcggcgtaaaa
ccggttagtcgagcaggtaccgagcgtcttgtgcgtgctgctattcaatatgctgttgat
gagaatcgtcgtagtgtcactctcattcataaggggaacatcatgaagtttacagagggc
gcttttcggaagtgggcctatgatctggccaggcgggaatttggggccatagggatagaa
gggagttcttggtgtcgattacctaatggaactgtaattaaggatgttattgccgatatt
gccctgcaacaagtgcttacacgtccggaagagtttgacgttatagctaccctaaatctg
aatggagattatctttcggatgcactagctgcgcaggtgggtggcattggcattgcgcca
ggtggcaatattaattatgtgacaggccacgcaatttttgaggcgacccacggcacttcc
cccaagtatgcagacttagatcgagttaatccaggatccgttatcctttctggtgaaatg
atgttccgttacttggggtggcatgaggttgctgatgctttagttaaaggacttaatgct
gctattgatactaggcgagtaacttatgattttgcccgtttgatggaagatgcttctgaa
atcaggtgttctgagtttggggacaatatcatttcccacttgtag
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