Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00056
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Entry
AMD24_00056 CDS
T04108
Symbol
groL
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMD24_00056 (groL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xii03019
]
AMD24_00056 (groL)
03110 Chaperones and folding catalysts [BR:
xii03110
]
AMD24_00056 (groL)
03029 Mitochondrial biogenesis [BR:
xii03029
]
AMD24_00056 (groL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xii04147
]
AMD24_00056 (groL)
Enzymes [BR:
xii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
AMD24_00056 (groL)
Messenger RNA biogenesis [BR:
xii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
AMD24_00056 (groL)
Chaperones and folding catalysts [BR:
xii03110
]
Heat shock proteins
HSP60 / Chaperonin
AMD24_00056 (groL)
Mitochondrial biogenesis [BR:
xii03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
AMD24_00056 (groL)
Exosome [BR:
xii04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
AMD24_00056 (groL)
Exosomal proteins of other body fluids (saliva and urine)
AMD24_00056 (groL)
Exosomal proteins of breast cancer cells
AMD24_00056 (groL)
Exosomal proteins of colorectal cancer cells
AMD24_00056 (groL)
Exosomal proteins of bladder cancer cells
AMD24_00056 (groL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
DUF5891
Motif
Other DBs
NCBI-ProteinID:
ALJ56251
LinkDB
All DBs
Position
64240..65871
Genome browser
AA seq
543 aa
AA seq
DB search
MAAKQLLFDEEARQALLRGISKLSKAVKATLGPSGRNIILDKKFGSPTITKDGVTVAKEI
ELEDPYENMGAQLVREVASKTSDLAGDGTTTATVLAEAIYREGLKNVTAGANPTQIQRGI
QKAVDALVKEIGQISKKVKDSTEIAQVATVSANWDSTIGQIIADAMEKVGKDGTITVEEN
KSIETVLEVVEGMQFDKGYLSPYFATNTESMEVALENAYVLIHEKKISSLKDLLPLLEKI
AKAGRPLLVIAEDVEGEALATLVVNKLRGTLQVAAVKAPGFGDRRKAILEDIAILTGGRC
LTEDLGIRLENVQVEDLGRAKRITIDKENTTIVEGEGKSSDIQGRVAQIRRLIEETTSDY
DREKLQERLAKLAGGVAVINVGAATETEMKEKKARVEDALHATRAAVEEGIVPGGGVALI
RVQRVLDSLHFEGDERIGSNIIRRAIEFPLRQLADNAGKEGALIVEEVKKRKGNDGYNVA
ADSYEDLVRAGVVDPAKVTRTALQNAASISGLLLTTEGLVTEIPEKEKPVTPPAPGGMGG
MDY
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgaaacaattactgtttgacgaagaagctaggcaggctctcctgcgcggtata
tcaaaactgtccaaggcagttaaggcgactcttggtccttcaggtcgaaatattatcttg
gacaagaaatttggaagcccaactatcactaaagatggtgtaactgttgcgaaggaaatt
gagctagaagatccatatgagaatatgggtgctcaactggtacgcgaagtagcctccaag
acttctgatttggcaggtgatggtaccacaactgcaacggtgctcgccgaggcaatctat
cgcgaggggttgaaaaatgtaaccgcaggtgcgaaccctacccaaattcagcgtggcatc
caaaaggcagttgatgctcttgtcaaggagattggccagatttctaaaaaggttaaagac
agcactgaaatcgcccaggtagcgactgtctctgccaactgggactctactattggacag
atcatagctgacgccatggagaaggttggtaaggatggcaccattacggttgaagagaac
aaatcgattgaaactgtcttagaagtggtagagggtatgcagttcgataaggggtatctt
tctccatactttgcaactaacactgaaagcatggaggtagctttggagaatgcttatgtt
cttatccatgagaagaaaattagcagcttgaaggacttgcttcccttgcttgaaaagata
gcaaaagccggtcgtccgcttctggttattgctgaagatgtagaaggagaggctcttgct
acactggtagtgaataagttacgtggtacactgcaggttgctgccgttaaagcccctgga
tttggagatcgccgtaaggcaattcttgaagacatcgctattcttactggtgggcgttgc
cttacagaagatttgggtatacggctagagaacgttcaggtcgaggatttagggcgtgcc
aagcggatcacgattgacaaagaaaacactaccatcgtggagggggagggtaagagctca
gatattcaaggtcgtgtggcccaaattcgtcgtctaattgaagagactaccagtgactac
gaccgtgaaaaactacaagagcgtctcgctaaacttgcagggggggtagctgtcatcaat
gtaggcgccgctacggagactgaaatgaaggaaaagaaagctcgtgttgaggatgcgcta
cacgctacccgtgcagctgttgaggaaggtatcgttcccggtggtggagttgccctcatc
cgagtacagagggtcttggatagccttcacttcgagggggatgaaagaatcggttcgaat
attattcgtcgggccatcgaatttccactgcgtcagctggctgacaatgctggaaaggaa
ggcgctttgattgttgaagaggtgaaaaaacgtaaaggcaatgatggctataatgtagcc
gccgattcctacgaagacctcgtgagagctggtgtggtagatcctgctaaagtaactcgc
actgcgctgcagaatgctgcttctatcagtgggcttcttctcactacggagggccttgtt
acagagattccagagaaagagaagccagtgacaccacctgctccaggcggaatgggaggt
atggactactga
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