Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00095
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Entry
AMD24_00095 CDS
T04108
Symbol
kdsB
Name
(GenBank) 3-deoxy-manno-octulosonate cytidylyltransferase
KO
K00979
3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:
2.7.7.38
]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii00541
Biosynthesis of various nucleotide sugars
xii01100
Metabolic pathways
xii01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
AMD24_00095 (kdsB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
xii01005
]
AMD24_00095 (kdsB)
Enzymes [BR:
xii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.38 3-deoxy-manno-octulosonate cytidylyltransferase
AMD24_00095 (kdsB)
Lipopolysaccharide biosynthesis proteins [BR:
xii01005
]
Lipid A
AMD24_00095 (kdsB)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
CTP_transf_3
NTP_transf_3
Glyco_tranf_2_3
ADH_zinc_N
ETF
Motif
Other DBs
NCBI-ProteinID:
ALJ56290
UniProt:
A0A0N7IE35
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Position
complement(105740..106492)
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AA seq
250 aa
AA seq
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MGRLVIIIPARWASTRFPGKSLCLLAGKPVLQHVWERCCCCMQVDDVYIATDDERIFQAA
KNFGAQVVRTSHTHLTGTDRVAEVAARLPGGVTHIINVQGDEPILDPYLLQRLVQTIDNS
KHLEMLTAATPFPKWADPNNPHMVKVVINSQGHALYFSRSAIPFVQHEEDYPCRLLHVGM
YGFEKAFLLKFVSWKPSPLERWEKLEQLRALENGVRIQVLLTQRASIGVDTPNDIGKVEA
ILQAEHNNFV
NT seq
753 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtctagtcattatcatcccagcaagatgggcttccacacgatttcctggaaaa
tctttatgccttcttgctgggaagcccgtattacaacatgtgtgggagcggtgttgctgt
tgtatgcaagtagatgatgtctacattgccacagatgatgagcggatctttcaagcggca
aagaactttggtgcacaagtcgtccgcacttcccatacgcaccttaccggaaccgatcgt
gttgctgaagtggctgccaggctaccagggggggttacccacatcatcaatgttcagggt
gatgaaccaattttggatccatatctcctacagcgccttgtacagaccattgacaactcc
aagcacttggaaatgctcacagcagcaactccgttcccaaagtgggccgatccgaacaat
cctcacatggtcaaggtagtaatcaatagtcaagggcatgcactctatttttctcgcagt
gcaatcccctttgtccagcatgaagaggattacccttgtcggctactgcatgtagggatg
tacggctttgaaaaagcgtttcttttaaaattcgtttcttggaaaccctctccactagaa
cggtgggaaaagctggaacaactcagagcactagaaaatggcgtccggattcaagtgctc
cttacgcagcgtgcctccataggtgtagatacccccaatgacattgggaaagtagaagca
attcttcaggcagaacacaacaactttgtttag
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