Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00138
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Entry
AMD24_00138 CDS
T04108
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase DacB precursor
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii00550
Peptidoglycan biosynthesis
xii01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
AMD24_00138 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xii01002
]
AMD24_00138 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
xii01011
]
AMD24_00138 (dacB)
Enzymes [BR:
xii01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
AMD24_00138 (dacB)
Peptidases and inhibitors [BR:
xii01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
AMD24_00138 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
xii01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
AMD24_00138 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
Beta-lactamase2
Motif
Other DBs
NCBI-ProteinID:
ALJ56333
LinkDB
All DBs
Position
complement(151815..152741)
Genome browser
AA seq
308 aa
AA seq
DB search
MQFHQYSSFFSWGSIASLLATVIPAQESVLIADNQTGYILHGRSIEHRLHIGTLATIATV
AVALDWIYVNRTPLSTLAVVPNGSDFNSILRPGDKISLRDLIYCIILSSDCGAAHTLAEY
IGSRVHNPRGLSAERNFVSQMNMLAHRLGMHHTHFLNPGGSCFTKKQQPYSTAVDIARLT
HYAHQKAQFRFYASQASRTIQIVRKGVVHSFYLQNTNQFLGYKRIDGVKGNNCCGEINRS
HLVLTTDHLPIATQHENRWIIITPRRLLIVLLGSTNCLNDGLASLRYGWRLYDEWITQGR
PIREHDFL
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgcagtttcatcaatacagctccttttttagttggggatccatcgcctcactccttgct
accgtcataccagctcaggaaagtgtgctcatagcagataatcaaactggctacattttg
cacggcagaagcatcgagcacagactccacatcggcaccctagcgactattgccactgta
gcggtagcactcgactggatctacgttaacaggacccccctctccaccctagctgtggtt
ccaaacggttcagatttcaattctatcctgagacccggagataaaatttctctgcgagac
ctgatttactgcataattctctcctcagactgtggggcagctcacacactggccgaatat
atcggctcgcgcgttcataatcctaggggtctttctgcagaaagaaactttgtctcacaa
atgaacatgctagcacaccgtttaggaatgcaccatacccactttcttaatccaggtggg
tcatgttttacaaaaaagcaacaaccctattcaacagcagtggatattgcccgcttgact
cattatgctcaccagaaagcccagttccgtttctatgccagccaggcctcacggactatt
caaattgtccgaaagggagtggtgcattctttctatctccaaaataccaaccaatttctt
ggttacaaacgcatcgatggggtaaaaggcaacaactgctgtggtgaaataaacaggagc
caccttgtactaacaactgatcatctccccattgctacgcaacacgagaacagatggatc
attattacccctcggcgccttctcattgttctattgggatctactaattgcttgaacgac
ggcttggcatctctacggtatggatggaggctatatgatgagtggattacccaagggcgt
cctattagagagcacgattttctctaa
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