Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00140
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Entry
AMD24_00140 CDS
T04108
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xii03016
]
AMD24_00140 (truB)
Enzymes [BR:
xii01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
AMD24_00140 (truB)
Transfer RNA biogenesis [BR:
xii03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
AMD24_00140 (truB)
Prokaryotic type
AMD24_00140 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
ALJ56335
UniProt:
A0A0P0GEH6
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All DBs
Position
complement(153751..154473)
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AA seq
240 aa
AA seq
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MKSRVSLDGILPVDKASGMTSHDVVAIVRRAFSTKKVGHCGTLDPLATGLLLVTIGKGTK
IQDLLMSEDKEYIGTLRLGSITDSQDAEGAILERRSVPHFSALQIEKAFCQLTGDFYQIP
PMVSAIKRNGVPLYRLAREGKNVERTPRFVHVHAFEILSVRLPEVDFCVECSKGFYVRTY
AHDIGMILGCGAYLQSLRRTRSGKFSLHGATTVEEVKNSSWDLLKRRVLSLPVVSRLRSA
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccagggtctcacttgatggcatactgcctgtagacaaagcttccggaatgact
tcacatgatgtcgtagctattgtccgtcgcgctttttctacaaaaaaggtcggccactgc
ggcacacttgatcctctggccactggtctgctccttgtgacaataggcaaggggaccaaa
attcaagatcttcttatgagtgaggataaggaatatatagggaccttgcgattaggaagc
attaccgatagccaggatgcagaaggggcgatactcgagaggcgttctgtaccgcatttt
tctgctctacaaatcgaaaaagcattctgccaactcactggagatttttatcaaatacca
cctatggtctcagcaattaaaaggaatggagttcctctctacagacttgcccgtgagggg
aaaaatgtcgaaaggacgccccgctttgtccatgtacatgctttcgaaattctgtcggtt
cgactaccagaggtagatttttgtgtggaatgcagcaaggggttctatgtgcgtacttat
gctcacgatatcggcatgatccttggctgtggtgcatacctccagtctctgcgccggact
cgatctgggaaattttccctccatggagctactactgtcgaagaggttaaaaattcctcc
tgggacctcctaaagaggcgtgttcttagccttccagttgtttctaggctacgtagcgca
tga
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