Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00375
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Entry
AMD24_00375 CDS
T04108
Symbol
valS
Name
(GenBank) Valine--tRNA ligase
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
AMD24_00375 (valS)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
xii01007
]
AMD24_00375 (valS)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xii03016
]
AMD24_00375 (valS)
Enzymes [BR:
xii01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
AMD24_00375 (valS)
Amino acid related enzymes [BR:
xii01007
]
Aminoacyl-tRNA synthetase
Class I (U)
AMD24_00375 (valS)
Transfer RNA biogenesis [BR:
xii03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
AMD24_00375 (valS)
Prokaryotic type
AMD24_00375 (valS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
tRNA-synt_1g
Anticodon_1
Val_tRNA-synt_C
tRNA-synt_1_2
tRNA-synt_1e
Motif
Other DBs
NCBI-ProteinID:
ALJ56553
LinkDB
All DBs
Position
403936..406545
Genome browser
AA seq
869 aa
AA seq
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MFEMPKSYEPTAVEKKWGAVWFQSSCFQADPYSSKPPFSVVIPPPNVTGILHLGHVLNNT
MQDALCRRARMMGHEVLWLPGTDHAGIATQAVVEGFLHKTQGIERCKMGREKFLEAVWEW
KEKHGSIITQQLKRLGCSCDWSRERFTMDSDYSRTVLQAFVDLYREGLIYRGKRMVNWCP
ASLTALSDEEVVMKANKGFLYTVRYEVLQQPGAFLEIATTRPETVMGDTAVAVHPEDPRY
QGFIGLCCLRPFPRAPIPIIADTCIDRSFGTGALKVTPAHDKADYAISQRHRLEIINVLH
PDGKINCPQLPQLDGLDRFQAREKAVKMLRAMGLLVKVEPYENHLGYSERANVPIESRLS
RQWFLRYPAVREALEAVRSGAVRFFPSQWVKVYEHWMENIQDWCISRQLWWGHRIPAWYG
EDGEVYVGLEPPPTDSRSWQQDPDVLDTWFSSWLWPFATMDTPTRAKFFPTTVLSTGFDI
LFFWVARMLMAGYRFMGKKPFANVVIHGLIRDSKGRKMSKTLGNSPDSLALLEKYGVDGV
RFGLLRAAPIGQDIRFDEKQLEEGRNFSNKLWNAARFRQMQGPLNCSPICQNELFSPPDI
CVAIVAKFDHVHQHIASAWESFHFQEITDTLYDFLWSSYCDEFVEAAKPHLQNVDNRDMI
LRTMDYLLSNVLLLIHPIMPYITEELWSLLGFSRSLGSSILLADPQNFPPHPSRGGKERS
LAAAAHLYQSAHIVRGLRAEFKISSRKLVRLLIQPTAFWSFADQLAFASLVKAETIETVS
SPPKGTAGVITSLGEFFIPLLGVDVVSERRRLLSEISRAEMEISKARSKLENAGFISHAP
GHVVTEYRVREDNWKKKKEILHGYLSSMT
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaaatgccaaaatcatacgaacctacggcagttgagaaaaaatggggtgccgtc
tggttccagagtagctgttttcaagctgacccatattcctctaagcctccattttccgta
gttattccaccccctaacgttactggaatcctgcatcttgggcatgttttgaacaacacc
atgcaggatgccctttgccgccgcgcgcgcatgatgggccatgaagtactctggctccca
ggtacagaccatgctggcattgctacgcaagccgtggtggaaggatttttacataaaacg
cagggcatcgagcgctgcaagatgggacgtgaaaagtttcttgaagccgtctgggagtgg
aaagaaaagcacggcagcatcatcacccaacaacttaagcgtctcgggtgctcttgtgat
tggtcgagggagaggtttaccatggattccgattattctcgtaccgtcctccaagctttt
gttgatctctaccgggagggactcatctaccgaggaaagcgtatggtaaactggtgccct
gcttcactcactgcactctctgatgaagaagtagtgatgaaggctaacaagggtttcctt
tacacggtccgctatgaggtcctacagcaaccgggtgctttccttgaaattgctaccacg
cgcccagaaactgtaatgggtgacactgccgtggctgtccacccggaagatcctcgctac
caaggctttattggtctttgctgtctgcgtccctttccccgtgctcccattcccattatt
gcggatacctgcattgatcggtcctttggcaccggcgcacttaaagttactcctgcacat
gacaaggccgattatgcaatcagccaacgtcatcgtctggaaatcattaatgtccttcat
ccagacggtaagatcaattgtccgcagctgcctcaattagacgggcttgatcggttccaa
gcccgcgaaaaagcagtgaagatgcttagagcaatggggttattggtaaaagtagagccc
tacgaaaaccatctcggctacagcgaaagagcaaatgttcccattgaatctcgcctttct
aggcagtggtttctgcgttatcctgctgtccgtgaagctttggaggctgttcgcagcggt
gctgtccgcttctttccttctcagtgggtaaaggtctatgagcattggatggaaaatatt
caagattggtgcattagccggcagttatggtggggacaccgcattcctgcatggtatggg
gaggatggagaagtttatgtgggtcttgagcctcctccgacagattcaagaagttggcag
caggatccagacgtcctagacacttggttcagctcttggctatggccgttcgcgaccatg
gacacacccacgcgagctaaattttttcccactaccgttctaagtaccgggtttgacatc
ctctttttctgggttgcccgtatgcttatggctggctatcggtttatggggaaaaagcct
ttcgccaatgttgttattcatggccttatccgtgactccaagggaagaaaaatgtctaag
actctcggaaattcgccagactctcttgcccttctggaaaaatatggagtagacggagta
cgttttggactgctacgtgctgcgccgattggtcaagacattcgcttcgatgaaaagcag
ctggaagagggccgcaatttttctaacaaactgtggaacgcagcccgttttcgccaaatg
caaggaccattgaattgctcccctatttgtcagaatgaacttttctctcctcctgatatc
tgtgtcgcgatagtggcaaagtttgatcatgtgcatcaacacatcgcatctgcatgggaa
tcatttcacttccaggaaatcaccgatactctttatgacttcctttggagcagctactgc
gacgaatttgtcgaggccgcaaagccccacctacagaatgtagataaccgtgatatgatc
cttcgtaccatggattatctgctttccaacgtccttcttcttatccatcccattatgcct
tatattacggaagagctctggagtttgctcggattcagccgatctttaggatcttctatt
cttcttgcggatccccaaaactttcctccacaccctagtaggggggggaaagagcgttct
cttgcagcagcagcgcatctctaccagagcgcccacattgtgcgcggtctgcgtgccgag
tttaagatctcctctcgtaaactagtacggctgcttatccaacccactgctttctggagc
tttgctgaccagctagcttttgctagcctagtaaaggccgaaaccatagaaacagtctcc
tctccgccaaaaggaacggcaggagtaatcacttctctaggcgagttctttatcccacta
ctaggagtagacgtcgtttctgaacgtcgcaggctacttagcgagataagcagagcagaa
atggaaatttctaaagcgagatccaagctagaaaatgctggttttatttcccatgctcca
ggtcacgtcgtgaccgagtatcgtgttcgagaggataactggaagaagaaaaaagaaatt
ttgcatggctatctctcttccatgacataa
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