Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00406
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Entry
AMD24_00406 CDS
T04108
Symbol
gyrA
Name
(GenBank) DNA gyrase subunit A
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xii03032
]
AMD24_00406 (gyrA)
03400 DNA repair and recombination proteins [BR:
xii03400
]
AMD24_00406 (gyrA)
Enzymes [BR:
xii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
AMD24_00406 (gyrA)
DNA replication proteins [BR:
xii03032
]
Prokaryotic type
DNA Topoisomerases
AMD24_00406 (gyrA)
DNA repair and recombination proteins [BR:
xii03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AMD24_00406 (gyrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
HU-CCDC81_bac_1
Motif
Other DBs
NCBI-ProteinID:
ALJ56582
LinkDB
All DBs
Position
complement(437101..439686)
Genome browser
AA seq
861 aa
AA seq
DB search
MYTQNGKAELVDVVEEMSRSFLDYSMSVIISRALPDARDGLKPAQRRILNAMYDLRLFPS
HQHVKCAKICGDTSGNYHPHGEMVIYPTLVHMAQRWAMRERLVEGQGNFGSVEGDPPAAM
RYTEARLTPLGAALMDDIFQETVDFVPNYDGRLTEPTVFPAAFPNLLVNGSMGIAVGMAT
SIPPHNLGEAIEATCAMITNPDITIDELSTHIRGPDFPTGCQIYGTSGIRQYFKTGRGSV
KVRGKAGVEEIKGGREQIVITEIPYNVNRAAFVERIAQLVSQKVITEISAVRDESDENTR
VVVELKRDTVPKVVINHLFKYTQLETSFPVYMLAIDHGQPKLLSLKEVIQCYTEHRREVV
LRRTRFLLRQAEERAEKLEGYLIALAHLDDFVRIAREATYREEAKTRLMAYKLAQDRVQS
IGICIRSVARLINGSYPFSATQADSVLELRLYQLTSLEQEKIKGEYQELLENIEDLKNIQ
ASESRVLSIIRSELRAVQKQYATARLTGIVSEESEIHIEDLIVNEGCIITVTYGGFIKRT
PVSAYRAQRRGGKGVIGMATRDTVGSGQEGDFVEHLFTASTHDYLMFFTKTGRCYVEKVY
EIPEMGRASKGRSVANLLNLQPGESIAATLRIQSKTINSGAVAVDLTWNASLYILFATES
GIVKKSNLVNFSNVRKGGIIAIRIEPGNQLIDAVLTTGDSEVILVTRRGMSIRFHEEELR
DQGRDTVGVLGIRLEEGDAVVGVAIVRPSATLLVAGENGIGKRTPFRDYRLQSRGGKGVI
TMKTGDKTGYVVGALAVNDRDELMLITTGGQLVRTHILGIREAGRNTIGVKLINLQAKEK
LQAIAPVVSQTTDEGPAPGEV
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgtatacacagaacgggaaggccgaattagtagatgtagttgaggagatgtcgcgatct
tttctcgactactctatgtctgttattatttctagagctcttccggacgctcgtgacggt
ttgaagcctgctcaacggcgtatccttaacgccatgtatgacctgcggctcttcccgagt
caccagcatgttaagtgtgcgaagatctgtggtgacacaagtgggaactaccatccgcat
ggcgaaatggtaatttacccaacacttgttcatatggcccagcgttgggccatgcgggag
aggttagtggaagggcaaggtaattttgggtcggtggaaggcgatcccccagctgcgatg
cgctatacggaagcgcgcctaacgcctcttggggcagccctcatggatgacatattccaa
gaaacggtagactttgttcccaactatgacgggcgcctgaccgaaccaacagtcttccca
gctgcattcccaaacctgctggtcaatggcagcatggggatcgccgttggtatggcaacg
agcatcccgccccataatctcggggaagcaattgaggctacctgcgccatgattaccaat
cctgatattacgatcgacgaattgtcaacccatatcagagggcctgattttcctactggc
tgtcagatttatggcacttccggaatccggcaatattttaaaaccgggcgtggctcggtt
aaggtgcgaggaaaggctggggttgaggaaattaagggcggtcgtgagcagatcgtaatc
acagaaattccctacaatgttaaccgtgccgcttttgtcgagcgcatcgctcagcttgtt
agccagaaggtgatcacagagatcagtgcagtgcgagatgagtcagacgaaaatactcgc
gtggttgtcgagctaaaacgggacacagtgccaaaggttgttattaatcacctctttaaa
tacactcagctggagacatcttttcctgtgtacatgttggctattgatcatggccaacca
aagttactctccctgaaggaagtaatacagtgttacaccgagcatcggcgcgaggtggtt
ttaaggcgcacgcgttttctacttcgtcaagcagaagaacgtgcagaaaaacttgaaggc
tacctcatagcgcttgctcacctggatgattttgttcgcattgctcgagaagctacttac
agggaggaagccaagacccgccttatggcatataaactggcacaggaccgagtacaatcc
attggcatttgcattcgaagtgtagcccgcctaatcaatgggagctatccctttagcgca
acgcaggcggactcagtcctagaattacgtctctatcaacttactagtcttgagcaagaa
aagatcaagggagagtatcaggaacttctagaaaatattgaggatctgaagaacattcag
gctagcgaatcccgtgtgttgagtatcattcggtctgaattgcgtgctgtccagaagcaa
tacgctactgcccgtcttactggaattgtatctgaagaaagtgaaatccacatcgaggat
ctcattgtcaatgagggatgcatcatcacggtaacctatggtggctttattaagcgtacg
cctgtgagcgcctatcgcgcccagcgtcgtggtggaaaaggagttatcggcatggctacg
cgggatactgtgggtagcggtcaggaaggagatttcgtcgaacatttatttacagccagc
actcatgattatctgatgttcttcaccaagacagggcgatgctatgtcgagaaggtgtat
gagataccagagatgggacgtgcctccaagggacgctccgttgccaatcttcttaacctc
cagcctggagagagtatcgctgctacactgcgaattcagtctaagaccataaattctggt
gccgtagcagtagatctcacttggaacgcttccctatacatcctctttgccacagaaagt
ggtatcgtcaagaagtctaaccttgtcaatttttccaacgtccgtaaggggggaattatt
gcaatcaggattgaaccaggaaaccagttaatcgatgctgtgcttaccaccggtgatagc
gaggtgatccttgttactcgtaggggaatgagcatccgtttccatgaggaggaattaagg
gatcaaggacgtgatacagtcggagttctgggtattcggttagaagagggagatgctgtg
gttggcgtcgctatcgtccgacctagcgccacgctacttgttgctggggaaaatggaatc
ggaaagcgcacccctttccgtgattatcggctgcaatcccgtggcggtaaaggagtcatt
acgatgaagaccggagataaaacaggctatgtagtgggtgcacttgccgtcaatgatcga
gacgagttaatgttgatcaccacggggggccagttagtccgcacccatatcctgggaatt
cgtgaggctgggcgtaacaccattggagtaaagttgattaatctgcaggcgaaagagaag
ctacaggcgatagctcccgtcgtgagtcaaacgactgacgagggtccagctccgggggag
gtataa
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