Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00446
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Entry
AMD24_00446 CDS
T04108
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii03030
DNA replication
xii03430
Mismatch repair
xii03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMD24_00446 (dnaE)
03430 Mismatch repair
AMD24_00446 (dnaE)
03440 Homologous recombination
AMD24_00446 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xii03032
]
AMD24_00446 (dnaE)
03400 DNA repair and recombination proteins [BR:
xii03400
]
AMD24_00446 (dnaE)
Enzymes [BR:
xii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AMD24_00446 (dnaE)
DNA replication proteins [BR:
xii03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AMD24_00446 (dnaE)
DNA repair and recombination proteins [BR:
xii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AMD24_00446 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ALJ56621
LinkDB
All DBs
Position
484562..488005
Genome browser
AA seq
1147 aa
AA seq
DB search
MSENSFVHLHVHTEYSLLDGAVRVSDLVGTAAKYEMPAVAITDHGNLHGAIEFYQQATKA
GVKPIIGCELYVALDQHREQSISLRKRATYHLTVLAQNEEGYRNLVRLVSNAHLEGFYYK
PLVDKALLAKYSRGLVALSGCLRGEINSLLAEGQVALARAAAATYRDIFGSENFFLELQD
HGIEAQTRCNLHLIEFSRDIGVGLVLTNDVHFLQRSHHEAHDVMICIGTGTMVYDERRIR
YTPELYLKPPQEMRGLFPHLSQAADNTLRVAERCNLNLEFGQPKYPAYKAPAGITREAYL
RQLCKEGLERRFGKDRAQRDINLNRRLEYELSVLETAGFVSYFLIVWDFIYFSKQRDIPV
GPGRGSAAGSLVAYVLGITDLDPLHYGLVFERFLNPERVSPPDIDIDFCQNRRGEVIEYV
RKRYGERSVAQIITFGTMGAKSVVRDVGRVLGWKYADVDRIAKMIPNELNITLQLASEKN
PVLRNTIEQEPHIQQLWDYALVLEGISRNTGIHAAGVVIGDRDLSDGYIPLCKGKDKEIV
TQFPMGPLTDLGMLKMDFLGLKTLTVIHDTISFIRHRQPGFDITQIPPNDTLTLDLLNQG
KTTGVFQLESNGMTNTCKRFQIRSIDDIIALIALYRPGPMDLINDYIERKKGLKKIEYDH
PLLKQVCSDTFGVMIYQEQVQQAASILAGYSLGQADLLRRAMGKKDKGKMAEERLHFIEG
CKRTNNIPEKKADSIFDLLEKFAGYGFNKSHSAAYGLICYQTAYLKANYPIEFMSGLLSN
EINNTDKISIFVAECQRMHLKILPPDINRSALKFTPESEQQAIRFGLAAIKNVGEQAMSS
AIQERSRGGAFRCLEDFCGRIGPRTVSRKVLESLVKCGAFDCFGHSRASLFAHIETAMKG
AVSIHRDRSSGQTSLFSLAEEGGHCTPQWPVPEVKPWSSRETLAYEKELLGFYVTGHPLD
TYRMALAGDQHVTIAEIRQLPEGSATLRIAGMLISVEEKFTKTDGRPYAILVVEDFTGAV
EVSAWNEVSSRFSGLLKVGTAVSLLTRVIKREESLRITVSDVHPLQPRPISQPIRLGLDW
QLINEGVLCEILDSVVRHPGNKELLIDFIDTNGNSCTIRAGDEFLVGNEIAIINEINQYL
VSREVGG
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaattcttttgttcaccttcatgtacatactgagtattccctcttggacgga
gcggtacgtgtttcggacctagttggaacagctgcgaagtacgaaatgccggcagtggcg
attaccgatcacggcaacctccatggtgctatcgagttttatcagcaggctactaaagcg
ggagtgaaacctattattgggtgtgagctctatgtggctctcgatcaacatagggaacaa
agcatctcactaagaaagagggctacctatcatcttaccgtccttgcgcagaatgaagaa
gggtatcggaacttagtaaggttagtttctaatgcccacttggagggcttttattataaa
ccactagtagacaaggcactacttgctaagtactccagaggactagttgctctcagtggt
tgcctaaggggagaaataaattctcttcttgcagaaggccaggtggccttagctagagct
gctgctgcgacttatcgagatatttttgggtcagaaaattttttcttggagttacaggac
catggcattgaagcgcaaacacgctgcaacctgcatctcatagaattttccagggatatt
ggtgtgggactcgtacttaccaatgatgttcactttcttcaacgctcccatcatgaagcc
cacgacgttatgatctgtattggaactggcacaatggtgtacgatgagagacgtatacgc
tacaccccagagctttacctcaagcctccacaagaaatgcggggcctctttccgcatctg
tctcaagcggcagacaacactttgagggttgcggagcgctgcaacctcaatctggagttt
ggacaaccaaagtatccagcctacaaagcacctgctggaattactcgggaggcctacctc
aggcaattatgcaaggaggggctagaaagaagatttggtaaagatcgagctcaacgagat
attaacctaaaccgtcgtctagaatatgaactttctgttctagaaacggcaggatttgta
agttatttcttaatcgtctgggacttcatctacttttcaaaacagcgtgacattccagtt
gggcctgggcgtggatccgccgcaggatcacttgttgcctatgtcttgggcattactgat
ctagatcctctccactacggactggtttttgagcgttttctaaatccagagcgcgtaagt
cccccagatatcgacatcgatttctgtcaaaaccggcgcggagaggtaattgagtacgta
cggaagaggtatggggaacgttctgttgcacagattatcaccttcggcactatgggagca
aagagcgtggtgcgcgacgtaggacgagtactaggctggaaatatgcagatgtcgaccgt
atcgctaagatgattcctaacgaattaaacattactctccaactcgcatcggaaaagaat
cccgtattgcgtaatacgatagagcaggaaccgcatattcaacaactttgggattatgcc
ttggtgcttgagggtattagccgcaacacaggcatccatgctgctggagtagtaattgga
gaccgtgacctctccgatggctatatccccctctgcaaaggaaaggataaagaaatcgtt
acacagtttcctatggggcctcttacagaccttgggatgttaaaaatggacttccttggc
ctcaaaaccctaaccgttatccacgataccatttcctttattcgtcaccgtcaaccaggc
tttgatattactcagattccacctaatgacactcttacccttgacctgctgaaccagggt
aaaactaccggcgtttttcagttggaatctaatggaatgacaaatacctgcaagcgtttt
caaattcggagcatcgatgatattattgccctcatcgctctgtatcgccctggtcctatg
gatctgatcaacgattatattgagagaaaaaaaggacttaaaaagatcgagtatgaccat
ccgctcttgaaacaagtttgttcggatacgtttggggtcatgatttaccaggaacaagta
caacaggcagcaagcattcttgctggatattctctagggcaggcggatcttttacgtcgc
gccatgggaaaaaaggacaagggaaaaatggcagaagagcggctgcactttatagaggga
tgcaagcgcaccaataacattccagagaaaaaagcggatagtatttttgatcttttggaa
aagtttgctggttatggatttaacaaaagccacagcgctgcatacggactcatctgctac
cagactgcttacctgaaggcaaactatcccatagaatttatgtctgggctgctaagtaac
gaaatcaataacacagacaagatctctatcttcgtagcagaatgccagaggatgcacttg
aaaatattgccgccggacattaaccggagcgctttaaaatttactcctgagagtgaacaa
caagcaattcgttttgggctcgctgctatcaaaaatgtaggggaacaggccatgtcttct
gctatccaggaacgtagtcgcggaggagctttccggtgtttggaagatttttgcggccga
ataggtcctcgaactgtcagccgtaaagttctggagagtttagtcaagtgtggagctttc
gattgctttggacactctagagcttctctgtttgcacatattgaaacggctatgaaggga
gcggtatctatccatcgagacagatccagtgggcaaacctccctattttctctagctgaa
gaagggggtcattgtactccccagtggccagttccggaagtaaaaccgtggtcatcccgt
gaaactttagcctacgagaaggagttacttgggttttatgttactggacacccgctagat
acgtatcggatggctctcgcaggtgatcagcatgtcacaatcgctgagataaggcagcta
cccgaaggctccgccacacttagaatagccggtatgctcatctcagtggaggagaagttt
actaagaccgatggcagaccatatgccattctagttgtagaagacttcaccggtgctgta
gaagtgtccgcgtggaatgaggtttcctcaagattctcaggcctactgaaggtaggtaca
gccgtttccctcctgacccgtgttattaagagagaagaatccctgcgtataaccgtaagt
gatgttcacccactccagcccaggcctatctctcaaccgattcggctaggacttgattgg
cagttgattaatgaaggggtgctttgtgagatactagactctgtggtcagacaccctgga
aacaaagagcttcttatcgattttatcgataccaatggtaattcttgtactatccgcgcc
ggtgacgaattccttgtcggaaacgagatagccatcataaatgaaatcaaccaatatctt
gtctcacgtgaagtaggcggatag
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integrated database retrieval system
