Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00460
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Entry
AMD24_00460 CDS
T04108
Symbol
dnaX_2
Name
(GenBank) DNA polymerase III subunit tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii03030
DNA replication
xii03430
Mismatch repair
xii03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMD24_00460 (dnaX_2)
03430 Mismatch repair
AMD24_00460 (dnaX_2)
03440 Homologous recombination
AMD24_00460 (dnaX_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xii03032
]
AMD24_00460 (dnaX_2)
03400 DNA repair and recombination proteins [BR:
xii03400
]
AMD24_00460 (dnaX_2)
Enzymes [BR:
xii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AMD24_00460 (dnaX_2)
DNA replication proteins [BR:
xii03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AMD24_00460 (dnaX_2)
DNA repair and recombination proteins [BR:
xii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AMD24_00460 (dnaX_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNAX_ATPase_lid
AAA
DNA_pol3_gamma3
RuvB_N
AAA_22
AAA_5
AAA_2
RCF1-5-like_lid
AAA_30
AAA_16
Rad17
AAA_18
AAA_7
AAA_assoc_2
AAA_33
TsaE
AAA_14
ABC_tran
nSTAND3
PGAP1_TMD
Motif
Other DBs
NCBI-ProteinID:
ALJ56633
UniProt:
A0A0P0G7X4
LinkDB
All DBs
Position
complement(499864..501492)
Genome browser
AA seq
542 aa
AA seq
DB search
MSYQVFSRKYRPQTFTELVGQGYVVNTLRNAIQLQRLAQAYLFVGPHGVGKTSVARVLAK
ALNCITGPTINPCGVCGSCIEIAESRSLDVLEIDGASNNGVENVRELREGVSFSPVRGPF
KVYIIDEVHMLSSGAFNALLKTVEEPPSHVKFILATTEVHKMPPTIISRCQRFDLRRIPA
QLITTHLKTIASREKIDVEEEALKAIAAAAEGSLRDAESMLDQAVAFCNNRVTESDVLSI
FGLTSSHTIVDLSSLVLHRRTKEALELTADQADRGCSLSHLLESWIVWLRNVLIQQVTPD
SSTHPAAQEQALCVQQGKLLELLDLLAEEQSRMKWAIDTQLQMDIAIIKAAHLLERASLD
DVLTTLTALSGETTISHPPSTLSCSKRPEEKSAHLPSEGVPCVEKDGSDTTQQPSNAQVI
WGTVVAEVMKQGSIKFRWLEEGRAISFEGNTLHVCFPRPFRAQFDSIFWADIQPILEKHL
SKIRGVPTRLAVELLEGFSSHKEDILHHTQSPAAPQNPAAAFKDDPLIRKALEVFKGTLQ
DM
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
gtgagctatcaggtcttttccagaaaatatcgcccgcaaacatttacagaactcgttggg
caaggatatgttgtaaacacattacggaatgctatacagcttcagcgcctcgcccaagct
tatctttttgttggaccgcacggcgttggaaaaacttctgttgctcgcgttcttgccaag
gcccttaactgcataacagggcccacaataaacccgtgcggagtctgtggttcctgcata
gaaattgcagaaagccgctcgctggatgtattggaaattgatggagcaagtaataatggt
gtggaaaatgtccgagaactccgtgagggtgtttccttttctcctgtgcgaggtcctttc
aaggtctacatcatcgatgaggtacatatgctttcctctggggcattcaacgcattgcta
aagaccgtggaagaacctccttcacatgtgaagtttatccttgccacgacagaagttcat
aagatgcctcctaccatcattagtcggtgtcaacgttttgatttgaggcgtatcccagca
caactgatcactacccatttaaaaactatcgcttccagggaaaaaattgatgtagaggaa
gaggccctaaaggctattgctgctgctgcggaagggagtttgcgagacgctgagtctatg
ttagaccaagcagttgccttttgtaataaccgggttactgagtccgatgttttatcgatt
tttggactgacatccagtcatacgatcgttgatctttcatctttagtcctccacaggaga
actaaagaagcactagaactaactgctgaccaagcggatcgaggttgctcgctctctcat
ctgcttgaaagctggattgtgtggctacgcaatgtactcattcaacaagtgacaccagat
tcctccacacacccagctgcccaggagcaagcattgtgtgtacagcagggcaagctcctt
gagctgcttgatctcttggcagaagagcaatctcgcatgaagtgggccatcgatactcag
ctgcaaatggatatcgctattatcaaagcagcacatttgctcgagcgagctagcttagat
gatgtgctaactaccctcaccgccctatctggagagacaaccatttctcaccctcctagt
acactttcttgctcgaaaagacctgaagaaaaaagtgcccatctgcctagtgaaggtgtt
ccctgtgtggagaaggacgggtccgacaccacgcagcaacctagcaatgctcaggtcatt
tggggaacagttgttgcagaggtgatgaagcagggatctattaaatttcgttggttagaa
gagggtcgggccatttccttcgaaggaaacacattacatgtgtgcttcccaaggcctttt
agggcacaattcgattccatcttttgggcagacatccagcctatactagagaaacacctt
tcaaaaataagaggagtccctactcgtcttgctgttgaactattggaaggtttctcttcc
cataaagaagacattctacatcatacacaatccccagcagccccccaaaaccctgcggca
gcttttaaagatgatcctctgattcgcaaggcgctagaagtttttaagggtacccttcag
gatatgtag
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