Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00525
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Entry
AMD24_00525 CDS
T04108
Symbol
lysA
Name
(GenBank) Diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii00300
Lysine biosynthesis
xii00470
D-Amino acid metabolism
xii01100
Metabolic pathways
xii01110
Biosynthesis of secondary metabolites
xii01120
Microbial metabolism in diverse environments
xii01230
Biosynthesis of amino acids
Module
xii_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
AMD24_00525 (lysA)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
AMD24_00525 (lysA)
Enzymes [BR:
xii01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
AMD24_00525 (lysA)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
ALJ56697
UniProt:
A0A0P0FZB4
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All DBs
Position
complement(550227..551549)
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AA seq
440 aa
AA seq
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MHHFAFHKGSLCCEQQELSYLSERYGTPLYVYSAQTIRDNFQRLEAASAPLDHLICYAVK
ANSNLAVLNLFAKLGSGFDIVSGGELYRVLQAGGCAGRCTFAGIGKTQEEIDYALKESVH
CFVVESEAELEIINRIAGKLGRRAPIALRINPDVEAGTHSYITTGKAHNKFGIDLGCAEE
AYAYAASLPHLFIRGIQTHIGSQILDCRPFVEAVEKLSPLVVRLKECYGVESFSIGGGMG
IVYQEALESGTPQWWEGADAKLLTPERYAAALLPLLSSLGVKILFEPGRSLVGNAGVLVT
QVIQVKKKFTKRFVIVNAGMNDLIRPALYEAPHQVVPLKHSSHLAAGTADVVGPICESGD
FFLQDTTLPNCQPGDYLALMSAGAYGAVMSSRYNSRPLAAEVMVDNSRSFLVREREKLSD
LIRGEHTIDTPSNAPHLESG
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgcatcactttgctttccacaagggatcactttgctgtgaacagcaggaactctcttac
ttgagcgagcgttatggaactcccctctatgtctattcagcacaaaccatccgggacaat
ttccagcgtttggaagctgcctcagcacctttagaccacctaatctgctacgcagttaaa
gctaattctaatctggctgtcctgaatcttttcgctaagctagggtcggggtttgacatt
gtctctggtggggaactctatcgtgtccttcaggccggtggttgtgctggtcgttgtacc
tttgcaggaatcggtaaaacccaggaagaaatcgactatgcacttaaggaaagtgtacac
tgctttgttgtagaatccgaagctgaactagagattatcaacagaattgcaggaaaactg
ggaagaagggccccaatagccttgcgtattaacccggacgtggaggcaggtacacattct
tacattactacgggaaaggcccacaacaaattcgggattgacctgggctgcgctgaagaa
gcgtacgcttacgctgccagtctacctcaccttttcattcgcggcatccagacccatatt
ggttcccagattctagattgtcgacccttcgtcgaggctgtcgaaaagctatcccctctt
gtcgtccgtctcaaggaatgttacggagttgagtctttcagcataggggggggtatggga
attgtctatcaagaagctctagaaagtggaactccacagtggtgggaaggggcagatgca
aaacttctaaccccggagagatacgctgcggccctcctaccactcctttcctcccttgga
gttaaaatcttgttcgaacctggccgcagccttgttggcaatgctggcgtacttgtcaca
caagtaatccaggtcaagaagaaatttaccaagcgcttcgtgattgtgaacgccggcatg
aacgatctcattcgacctgccctttatgaagcgccgcatcaagtggttcctcttaaacac
tcctcccatcttgctgcaggtacagcggatgttgttgggcctatctgtgagagcggagat
ttcttcctgcaggataccactctccctaattgtcagcctggagactatttagcacttatg
agtgctggtgcctatggtgctgttatgtcttcccgttataactcccgtcctcttgcagca
gaggttatggtagacaattccagatctttccttgttcgagagcgggaaaaactctctgac
ctcatccgcggagaacataccatagacactccttcaaatgcgcctcacctagaaagtggg
tag
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