Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00582
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Entry
AMD24_00582 CDS
T04108
Symbol
lgrB
Name
(GenBank) Linear gramicidin synthase subunit B
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Brite
Polyketide biosynthesis proteins [BR:
xii01008
]
Nonribosomal peptide synthetase (NRPS)
Linear NRPS
Surfactin family lipopeptide synthetase
AMD24_00582 (lgrB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Condensation
AMP-binding
Thioesterase
AMP-binding_C
PBV_CP
Motif
Other DBs
NCBI-ProteinID:
ALJ56751
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All DBs
Position
complement(612327..615950)
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AA seq
1207 aa
AA seq
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MREFPASPMQEAIYAVSTDILHGTTIADNIQISFNFGEPVDIRLLQKSWQWVIRRHGLLR
SGFSKKAGDVLSFREYKDCETVWHPLNWCNFSSEEISVQWNRLRSKDAAESIDLTHPPLF
HFHIIKLPREMHHFLWTCHPILLDRESIFLVLRDWLIFYEELSYGCQPSLQESPSYAAAI
GAIESADPAASCQHWKHLLQRINPLPFVAPSHSQASSGTPEDSPLKCEAFLLEKETTMQL
IQSASLADASLPILLAAAWGLVLGRVNVDGEAIFGIYRSCRRLAGSQAEESVGLFESCLP
FPIQVPEDLTCEAWLRSLQETELSTEPFLITNIQEVWNHVGHSDPCPQLSSTLHYLPESL
NNRIHTCLPQWMRFDAHIHQNSRFPMQVLACGRERLSIAIEYHPSWISPRIVRQLLERLL
KALHYFAEPNTLVSTIELGLPSEEEEAVCLGVVSPLVQPTFLDPFTALKRIVQLHGSRTF
VEKGSDSLSFSLMETYSSQFSTFLKNRSIGAGTVLALIMPLSPWTLVVLLGALRVGCTCL
PLDPEALPAELGEYLSRYQVSTVITDRNEEAIPGKIQHTLLVLEEPLWERILSLPRQVLP
IASLAPTSPVVSVLQSNGDRRVISYAELQTVVTNAICTYNTQPNDRILCHHLQGSAAAVE
ECFVALLTGATLIFPEKSIKSTRTAFQETLESAKITHLRLTAAFWSQWLHYLAELHHPTP
RTLHRIVIEAGHISRSIISKWKEQNRGKADCVVFYSPSEFLGSGIVTESLDDAPEFCEMG
LVCGRPQPSVAVFLVDSRYQLLPSYSPGILAYCLHENIQNGMCENKKTVTATIGGRSWQI
SVTDEWARWNQKGQLVLISQPYGQLPDSLDWTTLHRIEDALASHPDIIDGIVRSFTPLGE
QSSCLGAWIVPRDSHVASLPTTLDQHLREHLPRQLVPAHFALVTRFHLDPFDQIDPLSLA
TPKPQPIIPILVPTTTPQAEAGSCHHLNSGVEPLRRLPVITTLQTGIDGSIALYFIHAGR
GLAEDYFPIAQSLSSKYAVHCLVVPRRALAPSATVEKITCSLALVLQEYLSGEFALIGIG
VGAIFAWELAHQLDQKNKKSLSLVLFDIPPCNQKPAKWLQVLRRAFFIKEDKADPKDLVE
IIAEYRAPVLQREPHFFVSGKPDPKWCQRAPMGIWNQLHLEGGSPLDQPAEVAKLLTEVL
PSSQTNP
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgaattcccagcctctcccatgcaagaagctatttatgctgtgtccacagatatc
ctccatgggacaaccatagctgacaatatacagatttctttcaattttggagaacccgtg
gatatcagactgctccaaaagtcttggcaatgggtaatacgccggcatggtttgctccgc
tctggtttcagcaagaaagcaggcgatgtactctctttccgtgagtataaggattgcgaa
actgtctggcatcctctcaattggtgtaacttctccagcgaggaaataagtgtccaatgg
aatcgcctgcggtctaaagatgcagcagaatccattgatttaactcatccgcccctcttc
cattttcacatcatcaaactgcctagagaaatgcaccactttctttggacttgtcaccca
atcctattagacagggaatctatctttttggtgttgcgtgattggctgattttctatgag
gagctttcttatggatgtcaaccttctttgcaagaatctccttcttatgcagccgctatt
ggtgccatcgaaagtgcagaccctgcagcctcctgccagcactggaaacatctcttgcaa
cgaatcaatcctctaccatttgtagctccttcccattctcaagcatctagcggcacccct
gaggactctccgttaaaatgtgaggcttttctcttggagaaagaaactactatgcagctt
attcagtcagctagtctagcagacgcctccttacctattcttcttgcggcagcctggggt
ttggtccttggacgggttaacgtggacggagaggcaatatttggtatctatcgctcctgc
cgtcgtcttgcgggttcccaggctgaggaatcagtaggtctctttgaaagctgcttgccc
tttcctattcaggttccagaggacttaacctgtgaagcatggttgcgctctctgcaggag
acagaacttagtactgaacccttccttataaccaatatccaagaagtatggaaccacgtt
ggtcattctgatccctgccctcaacttagcagcaccctgcattacttaccggaaagtctt
aataaccgcattcatacttgcttacctcagtggatgcgtttcgacgctcacatacaccag
aactctcggtttcccatgcaggttctggcttgtggaagggaacgcctttctatcgctatc
gaataccaccctagctggatttctccgcggattgtacgccagttacttgaacgtcttctt
aaggcgctacactactttgcagagccaaatacactggtttctacgatcgagttaggcctt
cccagtgaagaggaggaagcagtctgtttgggggtggtatcccctttagtgcaaccaact
ttcctcgatccattcacagctctaaaaaggattgttcaactgcatggctcccgcacattt
gtagaaaagggaagtgattctttaagtttttctctgatggaaacctattccagtcaattt
tccacatttttaaaaaaccgttctataggtgctggaacagtccttgcactgataatgccc
ctttccccatggacgttggttgtcttacttggagcactaagagttggctgtacctgcttg
ccgctagatccagaagcattacctgccgaactcggggagtacctttccagatatcaggtg
tctactgtgataacagacaggaacgaggaggctattcctggaaaaatccaacacacttta
cttgtgttggaagagcctctatgggagagaatcctctctcttccaaggcaggtattaccc
attgcttctctcgctcctactagccctgtggtttctgtcctgcagtccaacggagatcga
agagtaatctcttatgcagagctacaaactgtcgtaacaaatgccatttgtacctataat
acgcagcccaatgaccggattctctgccaccacctccagggtagtgcagcggcagtagaa
gagtgctttgttgctctccttactggagccacattgatttttccagagaaaagcattaaa
agcacacggactgcctttcaggaaactcttgagtctgcaaagatcacacatctacgcctc
acggctgctttctggagtcaatggctacactatcttgccgaattacaccatcctacacct
cgtactttgcatcggatagtaattgaggcgggtcatatctcgcgttcgatcatttccaag
tggaaggaacagaacagaggaaaagctgattgcgttgtattttatagcccttcagagttc
ttggggagtggcattgtaacggaaagccttgatgatgcaccggagttttgtgagatggga
ctggtctgtggccgtccacagcccagtgttgcagtgtttcttgtagacagccggtaccaa
ctactcccctcttactctcctggaattcttgcatattgtttgcacgaaaacattcagaat
gggatgtgtgaaaacaagaagaccgtaactgccactataggtggccgttcctggcaaatt
tctgtgacagatgaatgggcacgatggaaccaaaaaggacagcttgtactgattagtcaa
ccttacggccaactcccagatagtttggattggacgaccctgcatcggatagaagatgca
cttgcttctcatccagatattattgacggcatagttcgtagctttactccgcttggggag
caatcgtcctgcttgggtgcatggattgtgccacgcgacagccacgtggcgtcattgcca
accacgttggatcagcatttaagggaacaccttccaagacagttggtacccgcacatttt
gcacttgtcacccggtttcatttagatccttttgatcagatagatccactgtctctagcc
actccaaagccgcaacctattatacctatacttgtgccaactaccactccccaggcggag
gcaggtagctgccaccacctaaactctggcgtcgaacccttacgacggctacccgttata
acgacgctgcaaacagggattgatggtagcatcgcgctctattttattcatgccggccga
ggccttgccgaggattatttccccatagcacagtctttatccagtaagtatgctgtacat
tgtctcgtggttcctaggagggcactagctccttcagctactgtagaaaaaattacctgc
agtttagcactcgttcttcaggaatatctctcaggtgaatttgctctcatcggtattggc
gtgggggcaatatttgcttgggagttagctcatcaattagatcagaagaacaaaaaaagc
ttgtctctcgtcctttttgacatcccaccttgcaatcaaaaacctgcaaagtggttacaa
gtcctaagaagggcgttcttcattaaggaggataaggcagatcctaaggatctggtggaa
ataattgccgaatatcgagccccagtacttcagagagaaccccattttttcgttagtgga
aaacctgatccgaagtggtgtcaacgtgctcctatgggaatatggaaccagctccatttg
gaaggaggatctcccttagatcagccagctgaggtagctaaacttcttacagaggttctc
ccttcgtctcaaactaatccttaa
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