Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00604
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Entry
AMD24_00604 CDS
T04108
Symbol
rpoZ
Name
(GenBank) DNA-directed RNA polymerase subunit omega
KO
K03060
DNA-directed RNA polymerase subunit omega [EC:
2.7.7.6
]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AMD24_00604 (rpoZ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xii03021
]
AMD24_00604 (rpoZ)
03400 DNA repair and recombination proteins [BR:
xii03400
]
AMD24_00604 (rpoZ)
Enzymes [BR:
xii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AMD24_00604 (rpoZ)
Transcription machinery [BR:
xii03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AMD24_00604 (rpoZ)
DNA repair and recombination proteins [BR:
xii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AMD24_00604 (rpoZ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb6
Motif
Other DBs
NCBI-ProteinID:
ALJ56771
UniProt:
A0A0P0G8A2
LinkDB
All DBs
Position
639686..639904
Genome browser
AA seq
72 aa
AA seq
DB search
MNSQILEEAFRRVENAPVLINMISKRVRQLNAGSRPMVAVRSGMGLSDVALSEVAAGKLG
VPQYPTSPAAVD
NT seq
219 nt
NT seq
+upstream
nt +downstream
nt
atgaatagccaaatccttgaggaagcctttaggagggttgagaacgctccggtcctgatt
aacatgatttccaagcgcgtgcgccagttgaacgcaggtagccgccctatggtagcggtt
cgatcaggtatgggactctctgatgtggccctttctgaagtagcggctgggaagcttgga
gttccgcagtatcctaccagtcctgcagccgtggattaa
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