Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00625
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Entry
AMD24_00625 CDS
T04108
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMD24_00625 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xii03019
]
AMD24_00625 (pnp)
03016 Transfer RNA biogenesis [BR:
xii03016
]
AMD24_00625 (pnp)
Enzymes [BR:
xii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AMD24_00625 (pnp)
Messenger RNA biogenesis [BR:
xii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AMD24_00625 (pnp)
Transfer RNA biogenesis [BR:
xii03016
]
Prokaryotic type
tRNA degradation factors
AMD24_00625 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
KH-I_KHDC4-BBP
S1_RRP5
OB_RRP5_4th
KH_2
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
ALJ56792
UniProt:
A0A0P0GFN6
LinkDB
All DBs
Position
complement(659779..661854)
Genome browser
AA seq
691 aa
AA seq
DB search
MAKLSDGAVTVRCGETIVLASAVSSATLKEGQDFFPLTVDYREKAAAAGKFPGGYFKREG
RPTEKETLTSRMTDRPLRPLFPKGYFYDTQIISLLLSADGENDPDILSINGASAALAVSD
IPFAGPVGAVRIGYICGEFIVNPTHTQRAQSDLDLVYVGDGKNVIMIEGTAGEFPESKLI
AALPIARRYVATLVDAQRELQRLAGRVKRTVPLLTVCTSLSETVHQVAGNRVETVLYIQD
KRAREKAIGALKEEVRAAALAKYPQATPFDLAQAFDLLQKRAFRIGILDRQQRCDGRGLH
QLRPIISEVGLVPRAHGSALFQRGETQAVALATLGAIDEAQMIDAYGGGEGSKRFILHYN
FPPFSVGETGRLGGSSRREIGHGALAERSIAPVVPIEDEFPYAIRISSEVMESNGSTSMA
SVCSGTLALMDAGVPIKRPVAGISIGLVAEFADDGSLARHATFTDIIGLEDHFGDMDFKL
CGTSVGVTGFQLDLKIPGIGHEILAEAIAKATEARVHILQQMVATISAPRAELNPYAPRI
ETICIPSEKIGLLIGPGGKTIRGIVAESGAEINIEDDGSVRIYSSNRESLQRAKEIIQGM
VREVAVGEIYQGAVVSIKEFGAFVEILPGKDGLVHISELADSHVRRVEDVLSIGDSIWVQ
CIGIDEKGRVKLSRRAAMKRRSVESVLSPKE
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagctttccgatggtgctgttaccgtccgctgtggggagaccatcgttctcgcc
tctgcggtttcgtcggcaaccctcaaggaagggcaggatttttttcctctcaccgtagat
taccgtgaaaaggcggccgcagctggcaagttccctggagggtatttcaaaagggagggg
cgccctactgaaaaggagacactgacctccaggatgactgatcgccctctccgccccctt
tttccgaaagggtatttttatgacacacaaatcatcagtcttctgttgagtgctgatggg
gagaatgatcctgatattctcagcatcaatggtgcctctgccgcgcttgctgtttctgac
attccatttgccgggccggtgggtgctgtgcgtatagggtatatctgtggggagtttatt
gtgaatcctactcacacacagcgcgctcagagtgatctcgacctcgtttatgtaggagat
ggaaagaatgtcattatgatcgaaggtaccgcgggggagtttcccgaatctaaactgatt
gcagcacttcccattgcccgcaggtatgttgccactctagtcgatgctcagagagagctt
cagcgccttgccggaagagttaaacgcacggtacctctactcactgtatgtacttctctg
tcggagaccgtccatcaagtggcagggaatcgtgtcgagacggtcctctacatccaagac
aagcgggctagggaaaaggccataggagccttaaaggaggaggtgagagccgctgcgctt
gcgaaatatccgcaggcaactccttttgaccttgctcaggcatttgacctcctccaaaag
agggcgtttcgcatcggcatcctagaccgccagcagcgctgcgatggacgtgggctccat
cagctgcgccccattatctccgaagtagggttggtcccgcgagctcacggttcggcgctg
tttcaacgtggtgaaactcaggccgttgctctagcaactcttggtgccattgatgaggct
cagatgattgatgcctatggtgggggggaaggaagcaagcggtttattcttcactataat
tttccaccatttagcgtcggagagactggccggctaggcggaagcagcagacgggaaatt
gggcatggggctcttgccgagcgttccattgcacctgttgttcctattgaggacgaattc
ccctatgccatccgcattagtagcgaagtaatggagtccaacggttccacgtcgatggct
tctgtctgtagcggaactctcgctctcatggatgcaggagtcccgattaagcggcctgta
gctggcatctctattggccttgtcgctgagtttgcagatgacgggtctctagctcgtcac
gctacctttaccgacattatcggcttggaagaccattttggagatatggatttcaagctc
tgtggcacctctgtgggagtaactggattccagctcgacctcaagatacctgggattggt
catgaaatcctggctgaagccattgctaaggctacagaagccagagtgcatattcttcag
caaatggttgcaactatttctgcacctcgtgcagagctcaacccttatgctcctcgcatt
gaaaccatttgcatccctagtgaaaagattggacttctaattggccctggtgggaaaact
atccgaggcatcgttgctgagagcggagcagagattaatattgaagatgacggctctgtc
cgcatctactctagtaacagagagagccttcaacgagccaaggaaatcattcaaggtatg
gtcagagaggtcgcggtaggtgagatttatcagggtgctgtggtatctatcaaggaattt
ggcgccttcgtcgagattcttccaggaaaagatgggttggtgcatatttccgaacttgct
gactcacacgtaagaagggtagaggacgtgctttctattggagatagtatctgggtacag
tgtattgggattgacgaaaaagggcgcgtgaaactcagccggagagcagctatgaaaagg
cgtagcgttgagtccgttctgtctccaaaagaatag
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