Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00629
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Entry
AMD24_00629 CDS
T04108
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SNF2_assoc
HDA2-3
AAA_22
SWIM
DGKI
Motif
Other DBs
NCBI-ProteinID:
ALJ56796
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Position
663111..665492
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AA seq
793 aa
AA seq
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MTPPKYLPVELTEKILMSMGGAQVFLKARRLCADSLISEVAYEPPMLKGKIKIRGRRFFS
GLLVRSSVDVDNLCSCKESRLYGTICEHSVAIGLSLLLPSIPATLPTSTPLSSPESEEDE
DVKSEFPQVELFLEGSLHHMEVQLRFHYSQPGCRNPAAENTVFAELCAWGFEHGRGYMHL
RGEGAILNFYAAGLPKLRSKWKIIEGTRWSRIAANLVSIEPHFAICKHASGWLDFHIHYT
AGTEAIFSQADMQKLLVRGRSYIHLKSGSIATLNVPELTDIEEVLRDCNPVQRGGVWHIP
AMFAPYLQDSTAMWSGISPTISPVDDTLRLGNLGSMKGRLRPYQIRGVQWLLERSRAGLG
GLLADEMGLGKTVQILAMLESIGGPALVVCPSSLVWNWEREAKQFFPELRVATISGPKRA
ALFSRILEYGLSITSYALLRRDIDQYRNIEFSVIILDEGQHIKSPESQNAKAVYTLRAQS
RFILTGTPIENSIQDLWALFRFLLPGYLGPLQSFRDRYEIPLLEEEGRDDIARRLFRRIQ
PYVLRRLKQEVLDDLPDKIEKVAEVELSRNQKEAYVAFQLAARRKIDALMKKSDSDAARM
LTLTALLRLRQLCCDLRLIHPEARESSSKIAALLELMQEVIGGNHRVLVFSQFTSMLDLI
ALALDGEKIRYCRLDGTTRDRKNVVDRFQEDCSLTVFLISLKAGGVGLNLTAADTVIHFD
PWWNPAIEEQATARAHRIGQRHTVTSIKLIARNTVEERILRMQQAKKELLSGVLDLEGAL
NRLSLIELRELIA
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgacccctccaaaatacttacctgtggaattgacagagaaaattttgatgtctatgggg
ggagcacaggtattccttaaggcaagacgcctatgtgctgatagtctaattagtgaagtt
gcttatgagccgccgatgctcaagggaaaaattaagatccgcggaaggcggttcttttct
ggcttgctggtccgaagctctgttgatgtagacaatctatgctcttgcaaggaatcacgt
ctctatggaaccatctgcgaacactcagtggccatagggttaagtctactacttccatca
atccctgctactctaccaacttctactcccctttctagcccagaaagtgaggaagatgaa
gatgtaaagagcgaattcccacaagtggaactattcctagagggttcacttcatcatatg
gaagttcagctccgttttcattattcgcaacctggctgtcggaatcctgcggcagaaaat
actgtctttgcagaattgtgtgcctggggatttgagcatggcagagggtacatgcatctt
cggggagaaggggcaatactcaacttttatgccgcaggtcttcctaaattacgtagcaag
tggaaaatcatagaaggaacgagatggagtcgtattgctgcgaaccttgtgtccattgag
cctcactttgccatctgcaagcatgcgagtggttggttggactttcacattcattacaca
gctggcacagaggccattttttcccaggcagatatgcagaaacttcttgtgagaggacgt
tcttacatccacctaaaaagcggtagtatagccacactcaatgtgccggagcttactgat
atagaagaggtgctgcgggattgtaacccagttcagaggggtggagtgtggcacattcct
gcaatgtttgctccctatctgcaggatagtacagcgatgtggtccggtatatcaccgact
atatctccagtcgacgatacgctgcgattagggaacttggggagtatgaaggggcgtcta
cgtccataccaaatccgaggggtacagtggctattggaacgatcgagggctggccttggt
ggcctccttgctgatgagatgggattggggaaaacagtacagatacttgccatgctagag
tctataggtggacctgcattggtagtttgtccatcatctttggtttggaactgggagaga
gaagccaaacagtttttccctgaactaagggtggccaccataagtggcccaaaacgggca
gcacttttttcaaggattctggagtatggattaagcataacaagttatgcactcttgcga
cgtgatatagatcaatatcggaatattgagttctccgttattattttggatgagggccaa
cacattaagagcccggaaagtcaaaatgcaaaggccgtttatacccttcgcgcacagagc
aggtttatcctcactggaacccccatcgaaaattccatacaagatttgtgggccctgttc
cgttttcttcttccaggatatctaggtccactgcagtctttcagggatcgttacgaaatc
cctcttcttgaagaggagggaagagacgatatagcacgtcgtctcttccgtcgtatccag
ccttatgttttgcggcggctaaagcaggaggtcttagacgatctccccgataagattgaa
aaagtggcagaggtggagctaagcagaaaccaaaaggaagcgtacgtggcctttcaactt
gccgctcgaagaaagattgatgcactcatgaaaaaatctgattctgatgcggcccgtatg
ttgaccttaactgccctattacgtttgagacagctctgttgtgatctccgtctcatccat
ccggaagctagggaatcctcctcaaaaattgcagcattgctagagctgatgcaggaggtc
ataggcggaaaccatcgtgtgctagtttttagccaatttacttctatgctggaccttata
gcgctggctctggacggagaaaaaatccgctactgtaggctggatggaaccacgcgggac
cgcaaaaacgttgttgaccgatttcaagaagattgttcactaactgtttttttaatcagc
cttaaagcaggtggagtaggactcaacctgactgcggcagatacagtgattcactttgat
ccctggtggaatccagcaattgaggagcaagctacagctcgtgcacatcgtattggtcag
agacacactgtgacttctattaagcttatcgcgcgtaacactgttgaggagcgtatccta
cgtatgcaacaggccaagaaggaattgctgagtggggtccttgacctggagggagcgctt
aaccggctgtcacttatagaactacgggagctcattgcttaa
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