KEGG   Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00654
Entry
AMD24_00654       CDS       T04108                                 
Symbol
ribD
Name
(GenBank) Riboflavin biosynthesis protein RibD
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
xii  Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii00740  Riboflavin metabolism
xii01100  Metabolic pathways
xii01110  Biosynthesis of secondary metabolites
xii01240  Biosynthesis of cofactors
xii02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:xii00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    AMD24_00654 (ribD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AMD24_00654 (ribD)
Enzymes [BR:xii01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     AMD24_00654 (ribD)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     AMD24_00654 (ribD)
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam
Other DBs
NCBI-ProteinID: ALJ56819
UniProt: A0A0P0FJ94
LinkDB
Position
complement(694994..696082)
AA seq 362 aa
MDLHLASDTLWMRRALAEAVRGVGWTSPNPAVGAVIVREGRLIARGFHRRAGGPHAEIAA
LQMLKSPGDARGAELFITLEPCSSAGRTPPCTDTIIAAGFSRVVFGAFDPNPLHAGHAVL
LLRSAGIQVATGVLEEECLLLNEGWNKWICTGSPLVIAKAAMSLDGYISSHPRRRWITSA
ASRRDAMGLRSTVDAILVGGETIRTDNPRLTLRRVPPRPQPWRVVWTQKSLPPDARIFTD
RYHDRTLVFQKSSLREILHSLGARSIRSVLIEGGGYLLGEALDQHVIDKFCLYYAPLFLG
GRVPAFGGLGISSLAQALRLTKVRYRCIGDDVRLEAYPQTTAIGGCSGRLNVSPIKIVPG
TS
NT seq 1089 nt   +upstreamnt  +downstreamnt
atggacctacatcttgcctcggatacgctctggatgaggagggcgctcgctgaggccgta
aggggtgtaggttggacaagcccaaacccagctgtgggggcggttattgtgcgggagggg
cgcctcattgcacggggttttcatcgtcgggctggtggtcctcacgcagaaattgcagca
ttgcagatgctgaaatcgcccggagatgcccgtggcgccgagctctttattacgctagaa
ccttgttctagtgccgggcggacgcccccttgcaccgataccatcatcgccgcagggttt
tcccgagtagtatttggagcatttgacccaaaccctctccatgctggccatgcggtgctt
ttactaagatccgcaggaattcaagttgctacaggcgttttggaggaagaatgtctcctt
cttaacgaagggtggaataagtggatatgcactggaagtccattggttatcgctaaggct
gccatgtctctggacggttatatttcttcccacccgcgacgacgctggattaccagtgct
gccagccgacgggatgccatgggtctccgctccactgtggacgccattctagttggggga
gaaacaatccgaactgataatccacgccttacccttcgtagggttccacctcgtccgcaa
ccctggcgtgtagtttggacgcaaaaaagcttacctccggatgcgaggattttcaccgat
cgctaccacgatcgcactctagtctttcagaaaagctctcttagggaaatactccactcc
ttgggagcacgtagcattaggtccgtactaatcgaaggaggggggtatttgcttggagaa
gcactagatcagcacgtcattgacaaattctgcctttattatgctccactatttttgggt
gggagggtgccagcctttggtgggttgggtatttcttctctcgctcaagcattaagactg
actaaagttcggtatagatgtattggagatgacgtccgcctagaggcctacccccaaaca
actgctataggtggctgttctggccgtttaaatgtatcgccaattaaaattgtgccagga
acttcctag

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