Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00660
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Entry
AMD24_00660 CDS
T04108
Symbol
dapF
Name
(GenBank) Diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii00300
Lysine biosynthesis
xii00470
D-Amino acid metabolism
xii01100
Metabolic pathways
xii01110
Biosynthesis of secondary metabolites
xii01120
Microbial metabolism in diverse environments
xii01230
Biosynthesis of amino acids
Module
xii_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
AMD24_00660 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
AMD24_00660 (dapF)
Enzymes [BR:
xii01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
AMD24_00660 (dapF)
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Paralog
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GFIT
Motif
Pfam:
DAP_epimerase
Motif
Other DBs
NCBI-ProteinID:
ALJ56825
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Position
complement(699694..700503)
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AA seq
269 aa
AA seq
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MRLSFTKMHGSGNDFVLIDNRDQRVHLAPSQITKICDRHYGVGADGLLLMESPQNGGDLR
MRYYNGNGQEAEMCGNGARCFTRYAQRILKSKQRAFSFETPAGLIRGALLGESVEVQMSE
PSNYCPPAFLQIAGVTEEVHFLSIGVPHAAVFVEAVEKVDVNLHGKEIRLHEAFAPLGTN
VNFIQIVATDHLRIRTYERGVEAETLACGTGAAACALLYHMHRSVLSPIWVTVQGGDTLR
VSFESSPNLRNVCVCGPASFVFDGEIEIF
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgaggctctcctttacaaaaatgcacggctccggtaacgacttcgtgctgatagataac
cgggatcaacgggtgcatcttgccccttctcaaattaccaaaatctgtgataggcattat
ggggttggggctgatgggttacttcttatggagtcacctcaaaatgggggcgatctcagg
atgcgctactataacggcaacggtcaagaggcagaaatgtgtgggaacggcgcccgttgc
tttactcgatatgctcaacgtatcttaaagagtaagcagagagcattttcttttgaaact
ccagctggccttatccgtggtgcgttgctgggtgagagcgtagaagtccagatgagcgag
cctagtaactattgtccgcctgctttcttacagatagcaggagtgacggaagaggtgcat
tttctcagtatcggggttcctcatgcagctgtttttgtagaggctgtggaaaaagtagat
gttaaccttcatgggaaggagattcgtcttcatgaagccttcgccccactgggaacaaat
gtcaattttatacaaattgttgccactgatcacctgcgcatccgtacctacgaacggggg
gtagaagcggaaactttggcgtgtggtactggagctgccgcatgcgctctcctttatcac
atgcacaggtctgttctttctccaatctgggttacggtgcaaggaggagataccctacga
gtttctttcgaaagttctcctaatttgcgcaacgtgtgtgtttgtggccctgctagcttt
gtttttgatggagaaatagaaattttctaa
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