Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00694
Help
Entry
AMD24_00694 CDS
T04108
Symbol
rho_2
Name
(GenBank) Transcription termination factor Rho-like protein
KO
K03628
transcription termination factor Rho
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMD24_00694 (rho_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xii03021
]
AMD24_00694 (rho_2)
03019 Messenger RNA biogenesis [BR:
xii03019
]
AMD24_00694 (rho_2)
Transcription machinery [BR:
xii03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AMD24_00694 (rho_2)
Messenger RNA biogenesis [BR:
xii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AMD24_00694 (rho_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
S1CSD-TOTE-2
Spore_III_AA
AAA_25
NACHT
ATPase_2
AAA_22
Mor
AAA_19
AAA_16
ABC_tran
AAA_18
Motif
Other DBs
NCBI-ProteinID:
ALJ56859
UniProt:
A0A0P0GAT3
LinkDB
All DBs
Position
complement(740071..741429)
Genome browser
AA seq
452 aa
AA seq
DB search
MIEEKETADTKPRRKRAAHLRHPKKNAPTRAFPTSTMGPLPQSSALTASPGNTLTLTDKE
GTTPSTAESPTQYHAEEYSGSSSVHVPSYAEGIIEVSGKGFGFLREARRNFAQSQNDVFV
TPEVVRKHGLRDGMKIKGETRRGSRGLQLFRLIGIEGEVPGIVRNFPIFEELTTVNPKAR
IRLETIPERFTTRIMDLIAPIGRGQRGLIVAPPRTGKTTLLQHIAEAVVKNYPEMGLIIL
LVDERPEEVTEIRRTVPQAALMASSNDSDIKSHTRVAQLAIERAKRLVEMGKHVFVLMDS
LTRIGRAFNNVQSGGGRTMSGGVDSRALEIPRKLFAAARNTEEAGSLTIMATALIDTGSR
MDELIFQEFKGTGNMELVLDRKISDQRIYPAVDIFLSGTRREELLLPEQDLHKVNIIRRG
LAGHKPIEAIERLLFFVQKYSSNAEMLHNIPG
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgattgaagaaaaagaaaccgctgatacaaagcctaggcgcaaacgtgcggcgcatttg
cgccatccaaagaaaaacgctcccactcgggccttccctacttctaccatgggccctctc
ccgcagtcttctgctctaactgcttccccaggaaacacactcactcttacagataaggaa
ggtacaaccccttctactgcagagtccccgacgcagtatcatgctgaagaatattcaggt
tcttcctccgtacatgttccttcttacgcagagggaattatagaagtatcaggtaagggg
ttcggctttctgagggaagcgaggcggaattttgcacaatcccagaatgatgtctttgtt
actccagaggttgtgcgtaaacacggtctccgagacgggatgaaaattaagggcgagact
cgccgaggtagccgtggcctccagcttttcagacttatcggaattgagggagaggtacca
ggtattgttcgaaactttcccatctttgaagagctaacaacagttaatccaaaagccaga
ataagacttgagacaatcccagagcgttttacaacccgcatcatggaccttatagcgccc
attgggcgcggacagcgaggtttaattgtggcccccccacgtactggaaaaactacactt
cttcagcatatcgcagaagcagtggtaaaaaattacccggaaatggggttaattattctc
cttgtggacgagcgccccgaggaggtgacagaaatccgtaggacagtccctcaggctgca
ctcatggctagttccaacgacagtgacattaaaagccacacccgtgttgcccagttagcc
atcgaacgagccaaacgccttgtagagatgggaaagcatgtttttgtccttatggattcc
ctgacccgtatcgggagagcgtttaataacgtacaaagtggaggggggcgtaccatgtct
ggcggagtcgattctagagcactggaaattccccgtaaactttttgcagctgcccgcaac
actgaggaggctggatctctcaccatcatggctacggctctcattgacacgggcagtcgc
atggacgaactgatcttccaagaattcaaaggaactggaaatatggaactcgttttagac
cgtaaaatcagtgatcagcgcatctatccagcagtagacattttcctctctggcactcgc
cgcgaagagctgcttcttccggagcaagacctccacaaggtaaacattatccgccgtggt
ttagctggacacaagccaattgaggccattgagaggctgctattttttgtccaaaaatac
tcttccaatgcagaaatgttgcataatattccaggatag
DBGET
integrated database retrieval system
