Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00758
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Entry
AMD24_00758 CDS
T04108
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii03420
Nucleotide excision repair
xii03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AMD24_00758 (pcrA)
03430 Mismatch repair
AMD24_00758 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xii03400
]
AMD24_00758 (pcrA)
Enzymes [BR:
xii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMD24_00758 (pcrA)
DNA repair and recombination proteins [BR:
xii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AMD24_00758 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
AMD24_00758 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_22
AAA_11
Terminase_6N
ResIII
ACT_5
Motif
Other DBs
NCBI-ProteinID:
ALJ56918
LinkDB
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Position
complement(801196..803127)
Genome browser
AA seq
643 aa
AA seq
DB search
MYPYGNAFWASLNTQQMAAVRAKAGASLVIAGAGSGKTRTLTYRVAWLLERGIPAKNILL
LTFTNKAAREMLERVAALVPQRSNGIWGGTFHSVGNRILRAHAGRIGFRQEFSILDREDQ
QKMIASLIKEEGLRAADKRFPKAEVLSAIFSLAVNAVGSISAILERHYPYFIVLAEQIER
IATLFRRRKYEANSMDFDDLLSKPLELLEGCKDIAEFYGEKFSHILVDEYQDINQLQSKF
VERLAARHGNIMAVGDDAQSIYSWRGAHFKTILDFPKRHPGASIFRIETNHRSTPEILSV
ADIVICANKNQFKKTLAAVRPSRGNKPTLASLSTSAEQASFVTERIVGLQEKGVPLGEVA
VLYRAHYHSMEVQLEFTRQAIPFSITSGLRFFEQAHIKDVLSFVKFAVNSRDELAFKRMV
QLLPGVGTKSAAFLWKEAATLLRRGCNFPPLSKLKIPLKSKRTWSQLTYLLEGSNSSLSS
PASLIETILLTIYGDYMKAHFPDYGTRQEDIRTLIAFAQNFENCEDFLSQLALLGAGDTA
SKTPLSCRPERVTLSSIHQAKGLEWRVVFLIWLAEGMFPNARSLENSEDLEEERRLFYVG
ITRCKDELYLSYPRSGLGGAYGEVFYSPSQFLRGIPQWIVDRL
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtacccctacggaaatgctttttgggctagtctcaatacccagcaaatggctgctgtg
agagctaaagcgggagctagtttggtgattgctggagcagggagtggaaagactcgcacc
ttgacttatcgagtagcctggctattagagcgggggattccggcaaaaaatatccttctt
ttgacgtttaccaacaaagctgcaagagaaatgcttgagcgtgtggctgctttggttccg
cagagaagtaacggcatttggggagggacatttcattctgtcgggaatcgcatcctccgg
gcccatgcaggtaggattgggttccgccaggaattttctatccttgatcgtgaggatcaa
cagaagatgattgcctccttaataaaggaggaaggattacgcgctgcagacaagcgtttc
ccgaaagcagaagtactttctgcaatcttcagcctggcggttaacgctgtgggatctatc
tcagctattttagagcgtcattacccttattttattgttctggcagaacagattgagcgt
atagctactttatttaggagacgcaaatatgaagccaattccatggatttcgatgatctg
ctttctaagccactagagctactggagggatgcaaagatatcgcggagttttacggggaa
aaattttcccacatcctggtggacgagtaccaagacatcaatcaacttcagtctaaattc
gtagagcgactagccgccagacacggaaacatcatggcggtgggggatgacgcacagtcc
atttactcctggagaggagcgcactttaagaccatcttagactttcccaaacgccaccca
ggcgcttctatctttcggatagaaaccaaccaccgtagtaccccagaaattctctccgta
gccgatatagtaatttgtgccaacaaaaaccagttcaaaaaaacattagctgcagtacgc
ccctccagaggaaataagccaactttagcgtcgctttccacaagcgctgagcaggcctcc
ttcgtgaccgaacgtatcgtcggtttgcaggaaaaaggcgtgccccttggcgaggtagca
gtcctgtatcgcgctcattatcactcaatggaggttcaactggaatttacccgtcaagct
atccctttttctatcacaagcgggctgcgattttttgagcaagcccatattaaggatgta
ctatcatttgtgaaatttgcagtaaattcgagagacgaacttgccttcaaacgcatggtt
caattgcttcccggtgttgggacaaagtccgcagcatttctctggaaagaggctgccact
cttcttagaagaggatgtaattttccccctctatctaagctaaagattccactaaaatcc
aaacgaacctggtctcagctaacttatctcctagagggctcaaattcttctctgtcatct
cctgcatccctaatcgagacaattctacttaccatctacggggattatatgaaggcacac
ttccccgattatggtactagacaggaagatattcgcaccctgatagcatttgcacagaac
ttcgagaattgtgaagactttctttctcaacttgccctacttggagctggagatactgct
agcaagaccccactctcctgtagacctgaaagagtgactctatcttctatccatcaagct
aaaggattagaatggagagttgttttcttgatttggctggcggaaggcatgtttcctaat
gcacgttccctagaaaattcagaagacctggaggaagagcgacggttattctacgtcggt
ataacacgttgtaaggatgagctttatctcagctaccctaggtctggtttagggggagct
tacggcgaagttttctattctccctcccaatttcttcggggtatcccacaatggatcgta
gaccgactgtaa
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