Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00774
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Entry
AMD24_00774 CDS
T04108
Symbol
rfaG
Name
(GenBank) Lipopolysaccharide core biosynthesis protein RfaG
KO
K02844
UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii00540
Lipopolysaccharide biosynthesis
xii01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
AMD24_00774 (rfaG)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
xii01005
]
AMD24_00774 (rfaG)
Lipopolysaccharide biosynthesis proteins [BR:
xii01005
]
Core region
AMD24_00774 (rfaG)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_trans_1_4
Glycos_transf_1
Glyco_transf_4
Glyco_trans_4_4
Glyco_trans_1_2
GT4-conflict
DUF6365
Motif
Other DBs
NCBI-ProteinID:
ALJ56933
UniProt:
A0A0P0FJH1
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Position
complement(817706..818809)
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AA seq
367 aa
AA seq
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MRIALARRGYSSTGGAEAYLSRLVQGLVDNGEEVRLYSSDKWPVRAWPYGKVCYIPGDTP
LRFARALHAQKRDFDCLLSLERVLRCDVYRAGDGVHASWLRRRKKFEPAWKAWFRSLNSK
HMEILRLERSAFDPYRTALVIANSQMVLEEILKYYDFPRERILLIPNGFQPQPASSRDRM
RIRNQYGLSSKETVVLFAGTGWKRKGLRFAVQAIYALKGQAKLLVVGQGPSKKYALPHTI
FAGPTSCIAPFYAAADIFLLPTIYDPSSNACLEALASGLPVITTFSNGFSELLENEELGN
AVEVGDVGSLTAALERWLPQEKRTAGRYMRIETAATFSVEKNVRRTLDAIRIAVSLQIWT
SSFTSPE
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgaggatagccttagcccgtcgtggctattcttccactggtggggcggaagcataccta
tctcggttggtacaagggttggtagataatggggaggaggtgaggctttacagctcagat
aagtggcctgtgagggcatggccttacggtaaagtttgctacattcctggcgatactccc
ctaagatttgcgcgtgcccttcatgctcaaaaacgagactttgactgtctattgagcctg
gaaagagtcttaaggtgcgatgtttaccgtgcaggggatggggtacatgcatcttggcta
cgtaggagaaaaaagtttgagcctgcgtggaaagcctggttccgttctcttaattccaag
cacatggagattttaagactagaacggtctgctttcgatccctatcgtacggcgctggta
attgcaaactcacagatggttctggaagagattctaaagtactatgactttccaagggag
cgtattttgctgattccaaatgggtttcagcctcaaccagcttcctcaagggatcgcatg
cgtatccgaaaccagtatggtctgtcttctaaagaaacagtagtgctttttgccggaact
ggttggaaacgtaagggattacgctttgcagtacaagcgatctatgctttgaaggggcaa
gcaaaattgctggtagtagggcaagggccctcaaaaaaatatgctcttccccacaccata
ttcgctgggcccacctcctgtattgctccgttttatgcagcagcagacatttttcttcta
ccaactatttacgatccctcttcaaatgcatgcctggaggcacttgcatcggggttgcca
gtaattactacattttccaatggtttttcagagctgctcgaaaatgaggagcttggaaat
gcagtagaggttggcgatgtaggcagccttactgcagcattagagcgatggttgccgcaa
gagaagcgtacagctggccgatacatgaggatagagaccgcggcaaccttttccgtcgaa
aaaaatgtgcgaagaactctggacgcgattagaatcgcggtcagcctccaaatttggacg
tcaagctttacttcacctgagtag
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