KEGG   Xanthomonas indica: Q7W82_02245
Entry
Q7W82_02245       CDS       T10539                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
xin  Xanthomonas indica
Pathway
xin03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:xin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Q7W82_02245 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xin03400]
    Q7W82_02245 (ligD)
Enzymes [BR:xin01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Q7W82_02245 (ligD)
DNA repair and recombination proteins [BR:xin03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Q7W82_02245 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: XCI81005
UniProt: A0AAU8I646
LinkDB
Position
515397..518027
AA seq 876 aa
MSLADYRRKRRFDKTREPEPGKPVPAGQRPIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPLDYATFEGEIPQGEYGGGHVAQFDHGVWSSAHDPEAQLAK
GHLRFELFGDKLKGGWHLVRSGKPARQPQWLLFKEDDAFASDLEADDLLADVTAAPAQDV
KRAGAGKPDKRKATVVAAPVRKGRRTNWAKLAQALPAAVPAAAPDGPFAAQLARLGDAPP
QGEHWIHEIKWDGYRILATVADGVVRLWSRNAIEWTDKIPEIRDAIAALGLRSAALDGEL
IAGKGTKEDFNLLQAVLSGERQGKLALALFDLLHLDGIDIAAAPLSERKALLQRLLQGAD
AHLAFSSHIDGDGDAAFQLAGAQHFEGIVSKRADRGYHGGRSDDWRKTKQLRSEEFAVVG
YTAPKGSRSGFGSLLLARPDAEHGWLYVGRVGSGFSDALLREVTALIGKAGSATPSVHVP
TTETDLRSARWFAPRFVVEVFYRGIGGQQLLRQASLKAVRPDKDIADLGDRDAPAPRAAA
ARATPPARKAKTGKTAKATKATKAAKAVGAKAASAKRGAAAVDSARTPPPLSSPGRVVFP
DIGATKREVWDYYNAVMDHLLPEIAGRPLSIIRCPAGAERACFFQKHHTAGLELVSSVRL
KEESGIQAEYLVVEDAAGLLELVQFNALEFHPWGAHAQRPDVADRVVFDLDPGPDVPFAE
VKRAATDIRKLLAQLELESFLRVSGGKGLHVVVPLAPGCDWDLTKRFAHGFADALAQSQP
ERFLATASKRLRNQRIFVDYLRNGRGATAVASYSLRARAGAPVAMPLAWSDLPKLHRADA
FKLRDVPGKLKRRRKDPWAGIDALKQNLARWAKAEK
NT seq 2631 nt   +upstreamnt  +downstreamnt
atgagcctcgccgactaccgccgcaaacgccgcttcgacaagacccgcgaaccggagccg
ggcaagccggtgccggcggggcagcggccgatcttcgtcgtgcagctgcatcacgccagc
cgccgccattacgatttccgcctgcaggtcggcgatgcgctgaagagctgggcagtgccc
aaggggccgagctacgaccccaaggtcaagcggatggcggtggaagtggaagaccatcca
ctggactacgccacgttcgagggcgagatcccccagggcgaatacggcggcggccacgtc
gcccagttcgatcacggcgtgtggagcagcgcgcacgacccggaagcgcaactggccaag
ggccatctgcgcttcgagttgttcggcgacaagctcaagggcggctggcatctggtgcgc
tcgggcaagccggcgcggcagccgcagtggctgctgttcaaggaggacgacgccttcgcc
agcgatctggaagcggacgacctgctagccgatgtcaccgcggcgccggcgcaggacgtc
aagcgcgccggcgccggcaaacccgacaaacgcaaggccacggtcgtcgccgcaccggtc
cgcaagggccgccgcacgaactgggccaagctcgcccaggcgctgccggcggctgtgccg
gccgccgcaccggacgggcccttcgccgcgcaactcgcccggctcggcgacgcgccgccg
cagggcgaacactggatccacgagatcaagtgggacggctaccggatcctggccaccgtc
gccgatggcgtggtgcggttgtggtcgcgcaatgcgatcgagtggaccgacaagattccc
gagatccgcgacgccatcgccgcactgggcctgcgttcggcggcgctggacggcgaactg
atcgccggcaaggggaccaaggaggacttcaacctgctgcaggcggtgctgtccggcgag
cgccagggcaagctggcgctcgccctgttcgacctgttgcacctggacgggatcgacatc
gccgccgccccgctgtccgagcgcaaggcattgctgcagcggctgctgcagggcgccgat
gcgcacctggccttcagttcgcacatcgacggcgatggcgacgcggcgttccagctcgcc
ggcgcgcagcacttcgaaggcatcgtctccaagcgcgccgaccgcggctaccacggcggc
cgcagtgacgactggcgcaagaccaagcaactgcgctcggaggaattcgcggtggtcggc
tacaccgcgcccaagggcagccgcagcggcttcggctcgctgctgctggcgcggccggat
gccgagcacggctggctgtacgtgggacgcgtgggctccggcttctccgacgccttgctg
cgcgaggtgaccgcactgatcggcaaggccggcagcgccacgcccagcgtgcacgtgccg
accaccgagaccgacctgcgcagcgcgcgctggttcgcgccgcgcttcgtggtggaagtg
ttctaccgcggcatcggcgggcaacaattgctgcgccaggcctcgctgaaggcggtgcgc
ccggacaaggacatcgccgacctgggcgatcgcgacgcaccggcgccgcgcgcggcggcc
gcgcgcgcaacaccgccggccaggaaggccaagacgggcaaaacggccaaggcgaccaag
gcgaccaaggcagcaaaggcggtcggcgcgaaggccgccagcgccaaacgcggcgccgca
gcggtcgacagcgcgcgcacgccgccgccgctgtccagcccgggccgggtcgtgttcccc
gacatcggcgcgaccaagcgcgaggtctgggactactacaacgcggtgatggaccacctg
ctgccggagattgccggacgcccgctgtcgatcatccgctgcccggccggcgccgaacgc
gcgtgcttcttccagaagcaccacaccgccgggctggagctggtgtcgtcggtgcgcttg
aaggaggagagcggcatccaggccgagtatctggtggtcgaggatgcggccgggctgctg
gaactggtgcagttcaacgccttggagttccacccctggggcgcgcatgcgcagcgcccg
gacgtggccgaccgcgtggtgttcgacctggacccggggccggacgtgccgttcgccgag
gtcaagcgcgcggccaccgacatccgcaagctgctcgcccaactggagctggagtcgttc
ctgcgcgtgtccggcggcaagggcctgcacgtggtggtgccgctggcgccgggctgcgac
tgggacctgaccaagcgcttcgcccatggtttcgccgacgccctggcgcagtcgcaaccc
gagcgcttcctcgccaccgccagcaagcgcctgcgcaaccagcgcatcttcgtcgactac
ctgcgcaacggccgcggcgccaccgcggtggcctcgtactcgctacgcgcgcgcgccggc
gcgccggtggcgatgccgctggcctggagcgacctgcccaagctgcaccgcgccgacgcc
ttcaaactgcgcgacgtgccgggcaagctgaaacggcgacgcaaggatccctgggccggg
atcgacgcgttgaagcagaaccttgcgcgctgggccaaagcggagaagtga

DBGET integrated database retrieval system