Xanthomonas indica: Q7W82_10830
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Entry
Q7W82_10830 CDS
T10539
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xin Xanthomonas indica
Pathway
xin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q7W82_10830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xin03019
]
Q7W82_10830
03009 Ribosome biogenesis [BR:
xin03009
]
Q7W82_10830
Enzymes [BR:
xin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Q7W82_10830
Messenger RNA biogenesis [BR:
xin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q7W82_10830
Ribosome biogenesis [BR:
xin03009
]
Prokaryotic type
rRNA helicases
Q7W82_10830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
adh_short
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XCI78802
UniProt:
A0AAU8I0W8
LinkDB
All DBs
Position
2507330..2509207
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AA seq
625 aa
AA seq
DB search
MSQDTPAPLLFADLGLSPAVMKAVADVGYESPSPIQAATIPALLTGRDLLGQAQTGTGKT
AAFALPILSRLDFAQRKPQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PDSRQVALFSATMPPAIKRIAQTYLNDPAEVIIASKTTTSANIRQRYWAVSGLHKLDALT
RILEVEPFDAMIIFARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGML
RAIERATRQPIEEMQLPSVDAVNDQRVSRFMEKISETIAAGGIDMYRDLLQKFEAEKNVP
MVEVAAALARLLQGDTPLLLAPDRPRPPQGERFERRERPERAARPAPPARGEDFDYHRDV
GSFEAPRRDKAPKAPRGAPDVGMETYRIEVGHQHGVKPANIVGAIANEAGLESKYIGRID
IHDDHSILDLPADMPRELLTHLKKVWVSGQQLQMRKLDDDAPGGAPFKPKFARTGKPGGK
PNAAGPRPAGRFAADRPPRKGPPKR
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagatacccccgcgccgctgctgttcgcagatctcggcctctcccctgctgtg
atgaaggcggtcgcagatgtcggctacgagtcgccgtcgccgatccaggccgccaccatc
ccggcgctgctgaccggccgcgacctgctcggccaggcgcagaccggcaccggcaagacc
gccgcgttcgcgctgccgatcctgtcgcggctggatttcgcccagcgcaagccgcaggcg
ctggtgctggcgccgacccgcgaactggcgatccaggtggccgaagcgttccaccgctac
gccgcggcgatccccggcttccaggtgctgccggtgtacggcggccagccctacgtgcag
cagctgtcggcgctcaagcgcggcgtgcacgtggtggtgggcaccccgggacgggtcatc
gaccatctcgatcgcggcaccctggacctgtccgagctgaagacgctggtgctggacgaa
gcggacgaaatgctgcgcatgggcttcatcgacgacgtcgaggcggtgctgaagaagctg
ccggactcgcgccaggtggcgctgttctcggccaccatgccgccggcaatcaagcgcatc
gcacagacctatctgaacgacccggccgaggtgatcatcgcctccaagaccaccacctcg
gccaacatccgccagcgctactgggcggtgagcgggctgcacaagctcgacgcgctgacc
cggatcctggaggtcgagccgttcgacgcgatgatcatcttcgcccgcaccaaggccggc
accgacgagctggcgcagaagctgcaggcgcgcggcctggccgcggcggcgatcaatggc
gacatccagcaggcgcagcgcgagcgggtgatccagcagctcaaggacggcaagctcgac
atcctggtcgccaccgacgtggccgcgcgcggcctggacgtggagcggatcagccacgtg
ctgaactacgacattccctacgacaccgaaagctacgtgcaccgcatcggccgcaccggc
cgggccgggcgcagcggcgaggcgatcctgttcgtcagcccgcgcgagcgcggcatgctg
cgcgcgatcgagcgcgccacccgccagccgatcgaggaaatgcagctgccgagcgtggac
gcggtcaacgaccagcgcgtgagccgcttcatggagaagatcagcgagaccatcgccgcc
ggcggcatcgacatgtaccgcgatctgctgcagaagttcgaggccgagaagaacgtgccg
atggtggaagtggccgcggcgctggcgcgcctgctgcagggcgacacgccgttgctgctg
gccccggaccgcccgcgcccgccgcagggcgaacgcttcgaacgccgcgagcggcccgag
cgcgccgcccgtccggcgccgcctgcgcgtggcgaggacttcgactaccaccgcgacgtc
ggcagcttcgaggccccgcgccgcgacaaggcgccgaaagcgccgcgcggcgccccggac
gtgggcatggagacctaccgtatcgaggtcggtcaccagcatggggtcaagccggccaac
atcgtcggcgcgatcgccaacgaagccgggctggagagcaagtacatcggccgcatcgac
atccacgacgaccactcgatcctggatctgccggcggacatgccgcgcgaactgctgacg
cacctgaagaaggtctgggtctccggccagcaactgcagatgcgcaagctcgacgacgac
gcccccggcggcgccccgttcaaaccgaagttcgcgcgcaccggcaagcccggcggcaag
cccaacgccgccggcccacgcccggccggccgcttcgccgccgaccggccgccgcgcaag
gggccgccgaagcgctga
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