Xanthomonas indica: Q7W82_16055
Help
Entry
Q7W82_16055 CDS
T10539
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
xin Xanthomonas indica
Pathway
xin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q7W82_16055 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xin03019
]
Q7W82_16055 (rnr)
03016 Transfer RNA biogenesis [BR:
xin03016
]
Q7W82_16055 (rnr)
Enzymes [BR:
xin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Q7W82_16055 (rnr)
Messenger RNA biogenesis [BR:
xin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q7W82_16055 (rnr)
Transfer RNA biogenesis [BR:
xin03016
]
Prokaryotic type
tRNA degradation factors
Q7W82_16055 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_IclR
HTH_24
RNase_II_C_S1
HTH_20
HTH_5
OB_Dis3
HTH_AsnC-type
PF0610-like_N
HTH_11
Motif
Other DBs
NCBI-ProteinID:
XCI79773
UniProt:
A0AAU8I2Y2
LinkDB
All DBs
Position
complement(3702298..3704745)
Genome browser
AA seq
815 aa
AA seq
DB search
MTTRKSKPGKPGKSASSDAPTSKRPPAAETPKKSRLPAWMPSFLRRGPKPPLQPLHPPSP
PPSTAPADAPAPIQDPYAAREAERYAQPIASREAILQLLERCDGPQTLDELAEQLGLTEP
TRKEALSKRLGAMLREAQLVQNRRGGYAPLQQTNLIPGVVIANPDGFGFLRPDEGGDDLF
LPPYEMRKVLHGDRALANVTGIDRRGRREGSIARVLERGLTRMIGRFSMEAGIAFVVPDD
KRIQRNVQIPADAVGEARDGQLVVCELTSAPDARRPPIGKIIAVLGDKLTPSLLVEAAIH
GHELPYEFPQAVLDEAAAVPLTVEPAAIKGRVDLRQTPLVTIDGADAKDFDDAVFCESNA
EGFRLVVAIADVSHYVRPGTPLDTEAVKRATSVYFPGFVVPMLPETLSNGICSLNPKVDR
MCFVCDMQIDRQGEVAGARFYEAVMNSHARLTYEQVWQAVGEKDEQVRKDVAAVLPQLER
LHQLYHVLAKARARRGAIEFESSEVRFVLDNTGEVTQAGMLVRNDAHKLIEECMIAANVA
AARYLLETHIPAPFRVHERPPESKYADLLEFLKEFKLSLPAWSKVVPGDYTKLLKKVRER
PDAALLESVLLRSQSMAVYSPDNAGHFGLALEAYAHFTSPIRRYPDLLVHRAIKYALTRG
APDKYLYAPREMAALALQCSERERRADEAEREVDERYRAAWMEKHVGGQFDGVVSGVTSF
GLFVELDQSKVNGLIHVTQLPQDYYQFDATRKTLTGERRGREFRLGDRVRILVLKASMEE
RKIDFRLVEEGAPAHDELPPPPPRGQPAKRKKKKY
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgacaactcgcaaaagcaagcccggcaagcccggcaagtccgcgtccagcgacgcgccc
accagcaagcgcccccccgccgccgagacgccgaagaaatcgcgtctgcccgcctggatg
cccagtttcctgcgccgcggccccaagccgccgctgcagcccctgcacccgccgtcgccg
cctccttccacggcgcccgccgacgcgccggcgccgatccaagacccgtatgccgcgcgc
gaggccgagcgctatgcgcagccgatcgccagccgtgaggcgatcctgcagttgctcgag
cgttgcgatggcccgcagaccctggacgaactggccgaacagctcggcctgaccgagccg
acccgcaaggaagcgttgagcaagcgcctgggtgcgatgctgcgcgaggcgcaactggtg
cagaaccgccgcggcggctacgcgccgctgcagcagaccaacctgatccccggcgtggtg
atcgccaatccggacggcttcggcttcctgcgcccggacgagggcggcgacgacctgttc
ctgccgccgtacgagatgcgcaaggtgctgcacggcgaccgcgcgctggccaacgtcacc
ggcatcgaccgccgcggccgccgcgaaggcagcatcgcgcgcgtgctcgagcgcggcctg
acccggatgatcggccgcttcagcatggaagccggcatcgccttcgtggtgcccgacgac
aagcgcatccagcgcaacgtgcagatccccgccgacgccgtcggcgaggcccgcgacggg
caactggtggtgtgcgagctcacctccgcgccggacgcgcggcgcccgccgatcggcaag
atcatcgccgtgctcggcgacaagctgaccccgtcgctgctggtggaagcggcgatccac
ggccacgaactgccctacgaattcccgcaggcggtgctggacgaagccgcggcggtgccg
ctgacggtggagccggcggcgatcaagggccgcgtggacctgcggcagacgccgctggtg
accatcgacggcgccgacgccaaggacttcgacgacgcggtgttctgcgagtccaatgcc
gaggggttccgcctggtggtggcgatcgccgacgtgtcgcactacgtgcgtccgggcacg
ccgctggataccgaggcggtcaagcgcgcgacctcggtgtacttccccggtttcgtggtg
ccgatgctgccggaaacgctgtccaacggcatctgctcgctcaaccccaaggtcgaccgc
atgtgcttcgtctgcgacatgcagatcgaccgccagggcgaggtggccggcgcgcgcttc
tacgaggcggtgatgaactcgcatgcgcggctcacctatgagcaggtgtggcaggcggtg
ggcgagaaggacgagcaggtgcgcaaggacgtggccgcggtgctgccgcagttggagcgc
ctgcaccagctctaccacgtgctggccaaggcgcgcgcgcgccgcggcgcgatcgagttc
gagtcctcggaagtgcgcttcgtgctggacaacaccggcgaggtgacccaggccggcatg
ctggtgcgcaacgacgcgcacaagctgatcgaggagtgcatgatcgccgccaacgtggcc
gcggcgcgctacctgctggagacgcacattccggcgccgttccgcgtgcacgagcggccg
ccggaatccaagtacgccgacctgctggagttcctcaaggagttcaagctgagcctgccg
gcgtggagcaaggtggtgccgggcgactacaccaagctgctgaagaaggtgcgcgagcgc
cccgatgcggcgttgctggaatcggtgctgctgcgcagccagagcatggcggtgtactcg
cccgacaacgccggccacttcggcctggcactggaggcctacgcgcacttcacctcgccg
atccgccgctatccggatctgctggtgcaccgcgcgatcaagtacgccctgacccgcggc
gcgcccgacaagtacctgtatgcgccgcgcgagatggcggcgctggcgctgcagtgctcc
gagcgcgagcgccgcgccgacgaggccgagcgcgaagtcgacgagcgctaccgcgccgcg
tggatggagaagcacgtcggcgggcagttcgacggcgtggtcagtggcgtgaccagcttc
ggcctgttcgtcgagctggaccagtccaaggtcaacggcctgatccacgtgacccagttg
ccgcaggactattaccagttcgacgccacccgcaagaccctgaccggcgagcgccgcggg
cgcgagttccgcctgggcgaccgtgtgcgcatcctggtgctgaaggcgagcatggaggag
cgcaagatcgacttccggctggtcgaggaaggcgcaccggcgcacgacgagttgccgccg
ccgccaccgcgcgggcagccggccaagcgcaagaaaaagaagtactga
DBGET
integrated database retrieval system
