Xanthomonas indica: Q7W82_17460
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Entry
Q7W82_17460 CDS
T10539
Name
(GenBank) DUF3418 domain-containing protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xin Xanthomonas indica
Brite
Enzymes [BR:
xin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Q7W82_17460
Messenger RNA biogenesis [BR:
xin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Q7W82_17460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XCI80028
UniProt:
A0AAU8I3Q3
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Position
complement(4048896..4053116)
Genome browser
AA seq
1406 aa
AA seq
DB search
MNAIEKPSVPARLRERRAAIDGALTRDRGRLLGLWSRWQAAPGNAALEATFEQALQASQA
RCAARAAQQPAITLDPQLPIAREAERIVALIRDHQVVVIAGETGSGKTTQLPKLCLAAGR
GAAGMIGCTQPRRIAARAVASRVAEELRTPVGETVGFQVRFNDRVGEQTRIKFMTDGILL
AEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKVIVTSATIDTARFAA
HFDDAPVISVEGRTYPVEVRYRPLEEPGLESGDGQPAAVEERAGLAEASDAERARPTAVS
NPDSRIPTPGLSVNDAIVAAVDEITRLDPRGDVLVFLPGEREIRDAHHALERRKYRETEV
LPLYARLSNADQDRVFNPGPRRRLVLATNVAETSLTVPRIRYVVDPGYARVKRYSPRQKL
DRLHIEPISQASANQRKGRCGRIAEGICYRLYAEADFQARPAFTDPEIRRSSLAGVILRM
LQLGLGRIEDFPFLEPPDERAVADGWQQLVELGAVGEPDRHGLRKLTEIGRKMARLPVDV
KLARMLVAAQQHGCLRPMLVIAAFLGIQDPRERPPEAREAADNAHARFADARSEFVGILR
LWDGYRQAHEELTQSKLRDWCGRHFLGFLRMREWRELHRQLHLLCAELGWAEEPEEASLR
PLLAGASAPAPARDAETAARATRGQLHRAARLAREGRGTGTPATPAPAAQAPPPAPAESG
EAPRASERERAAAYQALHRALLAGLPTQVGHRTEKGDFQAPRQRRFLLFPGSALARKPPP
WALPATLLDTQKVWGLTNAAIEPDWVIAELPHLLARKHFDPHWSRAQGQVLASEQISLFG
LVLAPKKPVHYGRIDPPGAHELFVRQGLVPGEINTRASFVADNQKVLAQAHEEEAKLRRA
GIVADEDWQARWYLDRIPGEIHSASGLDAWWKALAPEQRRALHWSLADLLPGEGSEAERY
PKYFPLGDARLPLQYRFEPGAADDGVTLEVPVHLLNALDPARLSWLAPGFVTDKAAALIR
SLPKALRRNYVPAPDFARAFYEAFPQPSADDMRGELARFLQRATGAPLSALEFDESTLEP
HLRMNLRLRDDAGKVLAESRDLDVLRARFGERAGQAFAARAGRAMAATGLREFPATPIPL
QVPGEAGVPAYPALVDEGDSAALRIFADRAQAESAHPRGVRRLLEIGLADKVKQARKQLP
VSPKTGLLYAAIESQERLRGDLVEAALNALLEQGLEAIRDADSFAQRRDAAARQLFGEAM
ERLKLAEAIMGAAADLKPQLESPLMGWASGNLDDLRAQLAALLHPGFLRETPATALAQFP
RYLRAMILRAERAKRDPARDQARMLELKPFVDALADAAAAGRADTPEWQALRWDLEELRV
SLFAQELGARAGISAKKLAQRVAQLR
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctatcgaaaaaccctccgtaccggcacgcctgcgcgaacgtcgcgccgcgatc
gacggcgcgctgacccgcgaccgcggccgcctgctgggcctatggtcgcgctggcaggcc
gcgcccggcaatgccgcgctggaggccacgttcgagcaggcgctgcaggcgtcgcaggcg
cgttgcgccgcgcgcgcggcgcagcagccggcgatcaccctggatccgcagctgccgatc
gcgcgcgaggcagagcgcatcgtggcgctgatccgcgaccaccaggtggtggtgatcgcc
ggcgagaccggctcgggcaagaccacgcagttgccgaagctgtgcctggccgccggtcgc
ggcgccgccggcatgatcggctgcacccagccgcggcgcatcgccgcgcgcgcggtggcc
agccgcgtggctgaggagttgcgcacgccagtgggcgagacggtgggcttccaggtgcgc
ttcaacgaccgcgtcggcgagcagacgcggatcaagttcatgaccgacggcatcctgctg
gccgagatcgccagcgaccgctggctgtccagctacgacacgatcatcgtcgacgaggcg
cacgagcgcagcctcaacatcgatttcctgctcggctatctgaagcagctgctgcgcaag
cgcccggatctgaaggtcatcgtgacctcggcgacgatcgacaccgcgcgcttcgccgcg
catttcgacgatgcgccggtgatcagcgtggaaggccgcacctatccggtagaggtgcgc
tatcggccgctggaggagccgggattggagagtggggatggccagcctgcggctgtcgag
gagcgcgcgggattggcagaagccagtgacgccgaacgcgcgcggccaaccgccgtttcg
aatcccgactcccgaatcccgactcccggcctctcagtcaacgacgcgatcgtggcggcc
gtggacgaaatcacccggctggatccgcgcggcgacgtgctggtgttcctgcccggcgag
cgcgagatccgcgatgcgcaccatgcgctggaacggcgcaagtaccgcgagaccgaggtg
ctgccgctgtacgcccggctctccaacgccgatcaggaccgggtgttcaaccccggcccg
cggcggcgcctggtgctggccaccaacgtcgccgaaacctcgctgacggtgccgcggatc
cgctacgtggtcgatcccggctacgcgcgggtcaagcgctacagcccgcggcagaagctc
gaccgcctgcacatcgagccgatctcgcaggccagcgccaaccagcgcaagggccgctgc
ggccgcatcgccgaaggcatctgctaccggctctacgccgaggcggatttccaggcgcgg
ccggcgttcaccgatccagagatccgccgctccagcctggccggggtgatcctgcgcatg
ctgcagctggggctgggacggatcgaggatttcccgttcctggagccgccggacgagcgt
gcggtggccgatggttggcagcaactggtggaactgggcgcggtcggcgagccggaccgc
cacggcctgcgcaagctcaccgagatcggccgcaagatggcgcggctgccggtggacgtg
aagctggcgcggatgctggtggcggcgcagcagcacggctgcctgcggccgatgctggtg
atcgccgcgttcctgggcatccaggacccgcgcgagcgcccgccggaggcgcgcgaggcg
gccgacaacgcacatgccaggttcgccgacgcgcgctcggaattcgtcggcatcctgcgc
ctgtgggacggctaccggcaggcgcacgaggaactgacccagtccaaactgcgcgactgg
tgcgggcggcatttcctcggcttcctgcggatgcgcgagtggcgcgaactgcaccgccag
ctgcatctgctgtgcgcggaactgggctgggccgaggagccggaggaggcctccctgcgg
ccgctgttggccggcgcttccgcgcccgcgccggcgcgcgatgccgagaccgcggcgcgc
gcgacccgcgggcagctgcaccgcgccgcgcgcctggcccgcgaaggccgtggcaccggc
acgccggccacgcccgcaccggcggcccaggccccgccaccggcgcccgccgagtcgggc
gaggcgccgcgcgccagcgagcgcgagcgcgccgcggcctaccaggcgctgcaccgcgcc
ttgctggccgggctgccgacccaggtcggccaccgcaccgagaaaggcgatttccaggcg
ccgcggcagcgccgtttcctgctgttccccggctcggcgctggcgcgcaagccgccgccg
tgggcgctgccggcgacgctgctggacacgcagaaggtgtggggcctgaccaacgccgcg
atcgagccggattgggtgatcgccgagttgccgcacctgctggcgcgcaagcatttcgat
ccgcactggtcgcgcgcgcaggggcaggtgctggcttccgagcagatcagcctgttcggg
ctggtgctggcgccgaagaagccggtgcactacggccgcatcgatccgccgggtgcgcac
gagttgttcgtgcgccagggcctggtgccgggcgagatcaacacccgtgccagcttcgtc
gccgacaaccagaaggtgctggcgcaggcgcacgaggaagaggccaagctgcgccgcgcc
ggcatcgtcgccgacgaggactggcaggcgcgctggtacctggaccggattcccggcgag
atccattccgcctccggcctggatgcctggtggaaggcgctggcgccggagcagcggcgc
gcgctgcactggtcgctggccgacctgctgccgggcgagggcagcgaggccgagcgctat
cccaagtacttcccgctgggcgatgcgcggctgccgctgcagtaccggttcgaaccgggc
gcggccgacgatggcgtgaccctggaggtgccggtgcacctgctcaacgcgctcgacccg
gcacggctgtcgtggctggcgcccggcttcgtgaccgacaaggccgcggcgctgatccgc
agcctgcccaaggcgctgcgccgcaactacgtgccggcgccggacttcgcccgtgcgttc
tacgaggcattcccgcagcccagcgccgacgacatgcgtggtgagctggcgcgcttcctg
cagcgtgccaccggcgcgccgctcagtgcgctggagttcgacgagagcacgctggagccg
catctgcgcatgaacctgcgcctgcgcgacgatgccggcaaggtgctggccgaatcgcgc
gacctggacgtgctgcgtgcgcgcttcggcgaacgtgccgggcaggccttcgccgcgcgc
gccggccgtgccatggccgcgaccgggctgcgcgaattcccggccacgccgattccactg
caggtgccgggcgaagccggcgtgccggcgtatccggcgctggtggacgagggcgacagc
gccgcgctgcgcatcttcgccgaccgtgcgcaggccgagtccgcgcatccgcgcggcgtg
cgccggctgctggagatcggcctggccgacaaggtcaagcaggcgcgcaagcagttgccg
gtgtcgcccaagaccgggctgctgtatgcggcgatcgagtcgcaggagcgcctgcgcggc
gacctggtggaggcggcgttgaacgcgctgctggagcaggggctggaggcgatccgcgac
gcggacagcttcgcccagcgccgcgacgccgccgccaggcagctgttcggcgaggcgatg
gaacggctgaagctggccgaggcgatcatgggcgcggccgccgatctgaagccgcaactg
gaatcgccgctgatgggttgggccagcggcaacctcgacgacctgcgcgcgcaactggcg
gccttgctgcatccgggcttcctgcgcgagaccccggctaccgcgctggcgcagttcccg
cgctatctgcgcgcgatgatcctgcgcgccgaacgcgccaagcgcgacccggcccgcgac
caggcgcgcatgctggagctgaagcccttcgtcgacgcactggccgacgcggccgcggct
ggacgtgcagacacgccggagtggcaggcgctgcgctgggacctggaagaactgcgggtg
tcgctgttcgcccaggagctgggtgcccgcgccggtatctcggccaagaagctggcgcag
cgggtggcgcaattgcggtga
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