Xenopus laevis (African clawed frog): 100036801
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Entry
100036801 CDS
T01010
Symbol
xab2.L, xab2
Name
(RefSeq) XPA binding protein 2 L homeolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100036801 (xab2.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
100036801 (xab2.L)
03041 Spliceosome [BR:
xla03041
]
100036801 (xab2.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100036801 (xab2.L)
Spliceosome [BR:
xla03041
]
Complex B
Other components
Prp19-related factors
100036801 (xab2.L)
Complex C
100036801 (xab2.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_19
TPR_8
TPR_15
ARM_TT21
RPN7
TPR_MalT
ARM_TT21_C
TPR_1
CCDC84
Motif
Other DBs
NCBI-GeneID:
100036801
NCBI-ProteinID:
NP_001090563
Xenbase:
XB-GENE-1009279
UniProt:
A0JPH9
A0A974HUD7
LinkDB
All DBs
Position
3L:141906730..141923298
Genome browser
AA seq
838 aa
AA seq
DB search
MPDKHILIEEDDLQYEEEILRNPYSVKCWMRYLESKLSGPSHALNLVYERALKELPGSYK
LWYAYLKQRRKQVKRRCVTDPAFEEVNNCHERALVFMHKMPRIWLDYCQFLMDQCKITRA
RRTFDRALRALPITQHHRIWPLYLRFVRAHPLPETAVRVYRRYLKLSPENAEEYIEYLRS
IDRLDEAASRLAAIVNQDGFVSKEGKSNYQLWQQLCTLLSQHPGSVRSLDAAAIIRGGLT
RFTDQRGKLWCALAEYHTRSGHFEKARDVYEEAIQTVTTVRDFTQVFDSYAQFEESVIAA
KMETVSDLGKEDEDDLDLELRLARFEQLIERRPLLLNAVLLRQNPHNVHEWHKRVQLYKD
KPHEIINTYTEAVQTVDPAKATGKPNSLWVSFAKFYEENGQIEDARAILQRATLVQYTHV
DDLASVWCQFGEMELRHENYDAALKILRKATAVPARKAEYFDSSEPVQNRLYKSLRVWSM
LADLEESLGTFKSTKAVYDRIIDLHIATPQIVINYAMFLEEHNYFEESFKAYERGIALFR
WPNVYDIWSTYLSKFIARYGGKKLERARDLFEQSLDGCPRKFAKNIFLLYAKLEEEHGLA
RHAMALYERATQAVETGEQYEMFNIYIKRAAEIYGVTHTRTIYERAIELLPDEQSREMCL
RFADMECKLGEIDRARAIYSYCSQICDPRLTAGFWQTWRDFEVRHGNEDTLREMLRVKRS
VQAKYNTQGTFLVSQKLRAEGGASEGTKEPADEMQALEQRAAVVAAEAEKDKPQMKEKIL
FVRSDASRSELAELTRQSNPDEINIGEDDESEDELEPDEVQLEQKSVPASVFSGINDD
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgccggataaacatatattaatcgaggaagatgatttgcagtatgaagaagaaatactg
cgcaacccttattcagtcaagtgctggatgcgctacctagagagcaagctttccggccca
tcacatgcactcaacctggtgtacgagagagcgctaaaggagctgccaggaagttacaag
ctgtggtacgcttacctgaagcagcggcgaaaacaagtcaagaggagatgtgtcaccgat
ccggcctttgaggaagtgaataactgccatgagcgagcccttgtctttatgcacaagatg
cccagaatctggttggattattgccagtttcttatggatcaatgtaaaattacccgtgcc
aggaggacattcgatcgagcattgcgtgctctacccatcacccaacaccaccgtatctgg
cccctctacttgcgttttgtaagagcccatccattgcccgagaccgccgtcagggtctat
aggagatatctcaagctgtcgccagagaatgcagaggagtacatagagtacctccgttcc
atcgacagactggatgaagcagcttcccgattggcagctattgtaaatcaggatggtttt
gtctcaaaggaagggaagtccaattaccagctatggcagcagctttgcacacttctgtcc
caacatcccggctccgttcgatcactggacgctgcagccattatcagagggggacttaca
cgatttacagaccagaggggcaagctgtggtgcgccctggctgaatatcacactcgcagt
ggccattttgagaaggcgcgagatgtctatgaggaagcaattcagacagttacgacagta
agagacttcactcaagtgtttgacagctatgctcagtttgaagagagtgtcattgctgca
aagatggagacagtcagtgatctgggtaaagaggatgaggatgacttggatcttgaactg
agactggctcgttttgagcagctgatagaacgcaggccactcttactcaatgctgtgtta
ctgcgacagaatccacacaatgttcatgagtggcacaagcgggttcagctatataaagac
aagcctcacgagataataaacacgtacaccgaagccgttcagactgtggatcctgcaaag
gcaactgggaaaccgaacagtctctgggtatcatttgctaaattctatgaggaaaacggt
cagatcgaagatgctcgggcaatcctgcaaagggcaacgctggtacaatacacacatgtg
gatgacttggcctcagtgtggtgccagtttggggagatggaactgagacatgaaaactat
gatgcggcgcttaagatactacggaaagccaccgctgtgccggcaaggaaggctgaatat
tttgattcctcggagccagtccagaaccgactgtacaagtccctgcgagtctggtccatg
ttggcagacttagaggagagcctgggcacttttaagtccacaaaagccgtgtacgaccgg
ataattgacctgcatatcgcaactccgcaaattgtcatcaattacgccatgttcctggag
gagcacaactactttgaggagagctttaaggcctatgaacgtggtatcgccttgttccgg
tggcccaatgtctatgacatatggagtacttacctgtccaagttcattgctcgttatgga
gggaaaaagctggagcgagctcgagatctgtttgagcaatccctggacggctgcccacgc
aagtttgccaaaaatatattccttctctatgccaaactggaagaagagcacggattagct
cgccatgccatggccttatacgagcgagccacgcaggctgtggagacaggggaacaatac
gagatgttcaatatttacatcaagagagctgcagaaatctacggggtcacccacacgcgc
actatctacgagcgcgccattgagctgctgccagatgaacagtcccgggagatgtgtttg
agatttgccgacatggagtgcaaactgggagagattgacagagccagagccatctattct
tactgctcccagatctgtgatccacggctcacagctgggttctggcagacatggagggac
tttgaagtgcgacacgggaatgaagacacgctgcgggagatgctgcgagtgaaaagaagc
gtgcaggccaagtacaacactcagggcacattccttgtgtcccagaaactgcgagcagaa
ggaggagccagtgaagggactaaggagccggcagatgaaatgcaggcgctggagcagaga
gcagcagtcgttgcagccgaagccgagaaagataaacctcaaatgaaggagaagatcctt
tttgtcagatcagacgcctcccgttcagaactggcagagctaacgcgtcagtccaatcca
gacgagattaacattggagaggacgacgagtcggaggacgagcttgaaccagacgaagtc
cagcttgagcagaaatctgtcccagcttccgttttctctggaattaatgatgattga
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