Xenopus laevis (African clawed frog): 100036804
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Entry
100036804 CDS
T01010
Symbol
taf5.L, taf2d, taf5, tafii100
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100036804 (taf5.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
100036804 (taf5.L)
03036 Chromosome and associated proteins [BR:
xla03036
]
100036804 (taf5.L)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
100036804 (taf5.L)
Coactivators
SAGA/TFTC/STAGA complex
100036804 (taf5.L)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
100036804 (taf5.L)
STAGA complex
100036804 (taf5.L)
TFTC complex
100036804 (taf5.L)
SAGA complex
100036804 (taf5.L)
SLIK complex
100036804 (taf5.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_Nup120_160
Beta-prop_HPS5
WD_LRWD1
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_WDR19_1st
CDK5RAP3
LisH_TPL
Motif
Other DBs
NCBI-GeneID:
100036804
NCBI-ProteinID:
NP_001116833
Xenbase:
XB-GENE-1004615
UniProt:
B1WBA4
LinkDB
All DBs
Position
7L:complement(23934383..23951600)
Genome browser
AA seq
783 aa
AA seq
DB search
MAAVPDEASVVVKSEPEVQDEVKADTSGCVDGNVQALGNGAPPSPSSPQAAPPVPPGVAA
PPAAAAPPAPGSDASDRQTLLAVLQYLKKRKLKDSADILLKESGLFDSEELLALTSLSPE
LAGEGDGAETNLLSRVSCAAGTGRADVSLSSAGGAAPSNSSSSACAGKVTLNNGPQDQPD
VSAVLSAYTQQGDPTLYEDYYSSLKRFIESVLDCHRAELSQLFYPLFVHMYLELVYNQHE
HKAKSFFDKFHGDQECYYEDDLRILASLTKKEHMKGNETILDFRTSKFVLRISRDSYQLL
KRHLQERQNNQIWSIVQEHLYIDIFDGMPRSKQQIDAMVGSLSGEAKREANKAKIFFGLL
KEPEIEVPLDDEDEEVENEEGKPKKKKPKKDSTGSKSKKQDPNAPPQNRIPLPELKDSDK
LDKIMIMKEAAKRVRLGPESLPSICFYSFLNAYQGLTAVDITDDSSLIAGGFADSTVRVW
SLTPKKLRSVKSASDLSIIDKESDDVLERIMDEKSSSEMKILYGHSGPVYATSFSPDRNY
LLSSSEDGTVRLWSLQTFTCLVAYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHY
QPLRIFAGHLADVICTRFHPNSNYIATGSTDRTVRMWDVLSGNCVRIFTGHKGPIHALAF
TPNGKFLSSGASDSRILLWDIGHGLMVGELKGHTNTVYALRFSKDGEILSSGSMDNTVRL
WDTVKSFEDLDTDDFTTSTGHINFHENSPDLLLGTFMTKSTPVIHLHFTRRNLLLAAGAY
TPQ
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggccgcagtgccagacgaggcgagtgtggtggtgaagtcggagcccgaagtgcaagat
gaggttaaggctgatacgtcggggtgcgtggatgggaacgtacaggcgctggggaatggc
gctcccccgagtccttctagtccccaagccgctcctcctgttccaccgggggttgcggct
cctccagcagcagctgctcccccagcgcccggctcggatgccagtgaccgccaaacgctg
ctggccgtgctacagtatctgaagaagcgcaaactcaaggactccgccgacatcctcctg
aaggagagcggactgttcgactccgaggaactgctcgccttaacctcgctcagccctgaa
ctcgccggggaaggggacggagccgagacgaacttgctgagccgagtgagctgtgcggcg
ggaactggaagagcggacgtttccttgtcttctgccggcggtgcggcgccttctaacagc
tcttcttctgcctgcgccgggaaagttactttaaataacggccctcaagaccagccggac
gtcagcgcagttttgtcggcttacacccaacaaggagatccgaccctctacgaggattac
tacagtagcctgaagcgctttatcgagtccgtgctagactgccatcgggccgaactctcc
cagctgttctacccactgtttgtccacatgtacctggaactcgtatacaatcagcatgaa
cacaaggcaaaatccttttttgataaatttcatggagatcaggaatgctattacgaagat
gatctgcgcattttagccagcctcaccaaaaaggagcacatgaagggcaacgagaccatc
cttgattttcgcaccagcaagtttgtgttgcgaatttctcgtgactcctatcagctgctg
aagaggcatctacaggagcggcagaacaaccagatctggagcatcgttcaggagcacttg
tacattgacatcttcgatgggatgccgcgcagcaagcaacagattgacgctatggtgggc
agtctgtctggggaagcaaaacgagaagctaacaaagcaaagatcttctttgggcttcta
aaagagccagagattgaagtccctttggatgacgaagatgaagaagtggagaatgaagaa
gggaagccaaaaaagaaaaagcctaaaaaagatagcactggatctaaaagcaagaaacag
gatcctaatgctccaccacaaaacagaattccacttccagaactaaaggactccgacaaa
cttgataaaatcatgatcatgaaagaagctgcaaaacgagtgaggctgggcccagaaagt
ttgccttccatttgtttctactcctttcttaatgcatatcagggtctgacagcagtggat
attactgatgattccagcctcatagcaggaggatttgcagactccactgttcgtgtttgg
agccttacccctaaaaaactgcggagtgtcaaatctgcatctgatctgagcatcatagac
aaagagtcggatgatgttttagaaagaatcatggatgaaaagtcttcaagcgagatgaag
attttatatggtcacagtggaccagtttatgctaccagcttcagtccagacaggaattac
ttgttatccagttctgaagatggcactgtccgtttatggagtcttcagacatttacatgc
ttagtggcttacaaagggcacaactacccagtctgggacacgcagttctctccttatggc
tactactttgtatcaggaggccatgaccgagttgcacgtttatgggctacagatcattat
cagccattaagaatatttgccggccatcttgctgatgtaatatgcacgcgctttcaccca
aactccaactatattgccaccggctcaacagatagaacggtcagaatgtgggacgtacta
agcggaaactgcgtgcggattttcacgggacacaagggaccaatccatgcgttggcattc
actccaaatggaaagtttctttcgtcaggagcttcagacagcagaattcttctgtgggac
attggccatggtttgatggttggggagttaaagggtcacacaaacacagtgtatgcactt
aggttcagcaaagatggagagattttatcatcaggttcaatggacaatacagttcggttg
tgggacacagtgaagtcctttgaagacttggatacagacgacttcacaacttcaacgggc
catataaacttccatgaaaactcgccggatttactgctgggtacctttatgaccaagtca
acccctgtcatacatctccatttcacaaggcgaaacttgctccttgccgcaggagcttac
acaccacagtga
DBGET
integrated database retrieval system
