Xenopus laevis (African clawed frog): 100037011
Help
Entry
100037011 CDS
T01010
Symbol
prpf40a.S
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100037011 (prpf40a.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
100037011 (prpf40a.S)
Spliceosome [BR:
xla03041
]
Complex A
U1 snRNP components
U1 related factors
100037011 (prpf40a.S)
Complex B
100037011 (prpf40a.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
DTW
DUF4936
Motif
Other DBs
NCBI-GeneID:
100037011
NCBI-ProteinID:
XP_018094273
Xenbase:
XB-GENE-6255556
UniProt:
A0A974H183
A0A1L8ENX8
LinkDB
All DBs
Position
9_10S:complement(60245956..60273585)
Genome browser
AA seq
907 aa
AA seq
DB search
MSASDGTNGPSQPALFPNGPRMMRGQFMNPVPHFSAVGLGALGPRGPVGPHGMIPPLLGP
MGGPQMGQMPSMIPSLMSGMMMATHVPQGLPPSMQASVNSMEPPLVPPLVAQAVHPIVAA
QQAISANSTGTEEQTKLKSQWTEHKSPDGRTYYYNAETKQSTWETPDDLKTPTEQLLSKC
PWKEFKSDSGKPYFYNSQTKESRWAKPKELEELEAMIKAEENSSASEEPTPVHVAAAPAM
EVNSTSTPQAVDLEIAHSDPTTPAIDTENAVTETEEQPVSVISSLQEKDVEAISNAVAEQ
PPKAETPVESTAVEEKEEEKAPKKVYTWNTKEEAKQAFKELLKEKRVPSNATWEQAMKMI
INDPRYSALAKLSEKKQAYNAYKVQTEKEEKEEARLKYKEAKESFQKFLENHEKMTSTTR
YKKAEQMFVDLEVWNAITERDRLEIYEDVMFFLAKKEKEQAKQLRKRNWEALKNILDNMT
NVTFSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRTLEKEEEDEKQKTLLR
ERRRQRKNRESFQIFLDELHDHGQLHSMSSWMELYPTVSSDIRFANMLGQPGSTALDLFK
FYVEGLKARYHDEKKIIKDILRDKSFVVDLRTTFEDFATVISSTKRATSLDAGNIKLAFN
SLLEKAEAREREREKEEARKMKRKESAFKSMLKQAAPPIEADSVWEELRERFTKEPAFED
ITLESERKRIFKDFVHTIEHECLHHHSKNRKHSKKSKKHHRKRSRSRSGSESEEEEVENH
TKKKRQKSDSRSGSEHSSSGESEKSSKKTKKHKKKSKKRRHKSNSPETDGEKERDREREK
KERDRDREKERESEKDRSKQRSETKLKSPRRKGRKNSGNWDTSGSELSEGELEKRRRTLL
EQLDDDQ
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctagtgatggtacaaatggaccaagtcaaccagcactatttccaaatggacca
cgcatgatgagaggccagtttatgaatccggtcccccacttctctgctgtagggcttgga
gccttaggtccaaggggacctgtaggaccacatggaatgattcctcctctgctaggaccc
atgggaggccctcaaatgggacagatgccttcaatgatcccttctctcatgtctggaatg
atgatggctactcatgttcctcaaggattacctccatctatgcaggccagtgtgaacagc
atggaacctccgcttgtgccaccacttgttgctcaggcagtgcatcccatagttgcagca
caacaagctatttcagcaaacagcacaggaactgaagaacaaaccaaactgaagtcacag
tggactgagcataaatccccagatgggaggacctattactataatgctgaaacaaagcag
tctacttgggaaacaccagatgacctgaagacacctacagagcaattattatccaaatgc
ccctggaaggagttcaaatcagattctggcaaaccatatttctacaattcccagaccaag
gaatccagatgggccaaacctaaagagctggaagagcttgaagcaatgattaaagctgaa
gagaacagcagtgctagcgaagagccaactccagttcatgtggctgctgccccagccatg
gaggtgaattctacatcaactccccaggcagttgatctggaaatagcacattcagatcca
acaacaccagccatagatactgaaaatgctgttacagagactgaagaacagccagtttct
gttatctcctcattacaagagaaagacgtggaggccatcagcaatgctgtagcagaacaa
ccccctaaagcagaaacccctgttgaatcaactgctgtagaagagaaagaagaggagaaa
gctcccaaaaaagtttacacttggaacacaaaggaagaagctaaacaagcatttaaggaa
cttcttaaagaaaagcgtgttccatccaatgcaacctgggaacaagctatgaaaatgatc
attaatgatccccgatacagtgctttggcaaagctgagtgaaaagaaacaagcctataat
gcttacaaagtgcagacagagaaagaagaaaaagaggaggccaggctgaaatacaaagaa
gcaaaggaatccttccagaagtttctagagaaccatgaaaaaatgacctctaccacacga
tacaagaaagcagagcagatgtttgtagatctggaagtgtggaatgcaattactgagcgg
gaccggcttgagatctatgaagatgttatgttcttccttgcaaagaaagaaaaggaacaa
gcaaagcaactacgtaagagaaattgggaagccttgaaaaatatacttgacaacatgact
aatgtgacgttcagcaccacttggtctgaagcccagcagtacctcatggacaaccctaca
tttgcagaggatgaggagctgcagaacatggacaaggaggatgccttaatatgctttgag
gaacatattcgtactttggaaaaagaagaggaagatgagaagcagaagactttgcttcga
gagaggcgacggcagagaaaaaacagggagtcttttcagatctttttagatgaattgcat
gatcatggacaattgcattccatgtcctcttggatggaattatacccaaccgttagttct
gacataaggtttgccaacatgttgggtcaaccaggatccaccgcactagacctttttaaa
ttttatgtggagggactgaaagctcgataccacgatgaaaagaagataattaaagatatt
ttacgggataaaagctttgtggtcgacctccgtaccactttcgaagattttgccactgtc
atcagctctaccaaaagggcaacatcgttagatgctggaaatatcaaactggcgtttaac
agtcttttagagaaagcagaagcaagggaacgagagcgagaaaaggaagaggctcgtaaa
atgaaaagaaaggaatctgctttcaagagcatgttaaagcaagcagctcctcccattgaa
gcagactctgtatgggaagagcttcgggaacggttcaccaaggagccagcctttgaagat
ataacactagagtctgagaggaagaggatattcaaagattttgtccataccattgagcat
gagtgtctgcaccatcactcgaaaaacagaaagcactctaagaagtccaaaaaacatcac
cggaaaagatctcgttcccgttcgggttccgagtcggaggaggaggaggtggagaaccac
accaaaaagaaaaggcagaaatcggactcaagatcaggatcagaacattcctcaagtggc
gaatcagaaaaaagctccaaaaaaacaaagaaacataaaaagaagagcaaaaagaggaga
cacaagtctaattccccagaaactgatggagaaaaggagagggatcgggagcgagagaag
aaagaaagagaccgggatagagaaaaagagagagagagtgaaaaagatagatcaaagcaa
agatcagaaaccaaattaaaatctcccagacggaaaggaagaaaaaattcaggtaattgg
gacacgtctggaagtgagctaagtgaaggagaactggaaaaacgcagacggactctatta
gaacaacttgatgatgaccaataa
DBGET
integrated database retrieval system
