Xenopus laevis (African clawed frog): 100049754
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Entry
100049754 CDS
T01010
Symbol
lsm1.L, lsm1
Name
(RefSeq) LSM1 homolog, mRNA degradation associated L homeolog
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100049754 (lsm1.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
100049754 (lsm1.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100049754 (lsm1.L)
mRNA degradation factors
5'-3' decay
Lsm complex
100049754 (lsm1.L)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
100049754
NCBI-ProteinID:
NP_001092164
Xenbase:
XB-GENE-971228
UniProt:
A5D8N1
A0A974DDT5
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All DBs
Position
3L:complement(141685707..141695828)
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AA seq
133 aa
AA seq
DB search
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGYLRSIDQFANLVLHQTVERIHVGKKYGDIP
RGIFVVRGENVVLLGEIDLEKESDTPLHQVSIEEILEDQRIEQQSKNEAEKLKVQALKER
GLSIPRADTLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaattatatgcccgggaccgccagcctcatagaggatatagacaaaaaacacttggtc
ttactgagagatgggaggacccttataggatatctaaggagcattgaccaatttgcaaat
cttgtgttgcatcagaccgtggagagaatccatgtcggcaagaaatatggtgacatacca
cgaggaatttttgttgtgcggggggagaacgtggtcctgctgggcgagattgacctggag
aaagaaagcgacacccctctccatcaggtctccatagaggaaatcctagaggatcagcgc
atcgagcagcagagcaagaacgaagcggagaagctgaaggtgcaggctctaaaagagcgg
ggcctgtccatccccagagcagacactctggatgaatactga
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integrated database retrieval system
