Xenopus laevis (African clawed frog): 100049782
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Entry
100049782 CDS
T01010
Symbol
sox17b.1.L, sox17, sox17-beta, sox17b.2, sox17b.2.L, sox17b.3, Sox17beta, tSox17beta, Xsox17, Xsox17-beta
Name
(RefSeq) transcription factor Sox-17-beta.3
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
100049782 (sox17b.1.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xla03000
]
100049782 (sox17b.1.L)
Transcription factors [BR:
xla03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
100049782 (sox17b.1.L)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
100049782
NCBI-ProteinID:
NP_001092185
Xenbase:
XB-GENE-865510
UniProt:
A5D8R3
A0A974HGB2
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Position
6L:122911770..122913812
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AA seq
373 aa
AA seq
DB search
MSSPDCGYASDDQIQRSCSLPMMMGQYQWTEPRTVFQEGKPKRDEVSANSRSKAEARIRR
PMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKSLNLATKRPFVEEAERLRVQHIQ
DYPDYKYRPRRKKQVKRMKREEECFFPSANIPGPEAMVNNVMVGQKYKMQYSVQNLQENQ
LPTAGYFEGHSPMGYFYKDYDVPNYYTSQNSSGYCSPPTQDEYQALSYGFGSSYMPYQQT
TTTPVMAKQISVTQNIPQESPEHGMMASPQMYNGQMYLPECAKTHPVAQTEQHSPSHQSQ
QMVSQNYLQSQQDGHLETDIDKTEFDQYLMYEPKSDPELIYTIDQDSGPYSTNLLPSLIS
EANNVCYYDYCGV
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcccagactgtggctacgccagcgacgatcaaattcagagaagctgctcacta
ccaatgatgatgggccagtaccaatggaccgaacccaggaccgtctttcaggaaggcaaa
ccgaagagagacgaagtatccgccaattctaggagcaaagccgaggctcgaatccgccgg
cctatgaatgccttcatggtgtgggcaaaggacgagcgcaagagactggcacagcagaac
cccgacctgcacaacgccgagctcagcaagatgcttggtaaatcatggaaatcccttaac
ctggcaacaaaacgcccctttgtggaggaagctgagaggctgagggtgcaacacatccag
gactatcccgattacaaatacagaccccgcaggaagaagcaggtgaagaggatgaagagg
gaagaggagtgcttctttccaagtgcaaacatccctggacctgaggcgatggtcaacaat
gtcatggtaggacagaaatacaagatgcagtattctgtgcagaacctccaggagaaccaa
ctccccacagcaggctacttcgagggccacagccccatgggatacttttacaaagattac
gatgtacccaattactacacttcccagaacagctctggctactgtagcccccctactcaa
gatgagtaccaagcactgtcttatggcttcggcagcagctatatgccctaccagcagact
actacgaccccagtgatggctaaacagatttcagttactcagaacattccccaggaaagt
cctgaacatggcatgatggcatctccacaaatgtataatggacaaatgtatttgcctgag
tgtgccaaaacccacccagtggcacaaactgagcagcattccccttcacatcagtcccag
cagatggtgagtcagaattatctacagtcccaacaagatggacacctagagactgacatt
gacaagactgagtttgaccagtaccttatgtatgagcccaagtctgatccagagctcatc
tataccattgaccaggacagtgggccttatagtacaaacctcctgccatctttaatctca
gaggcaaacaatgtctgctactatgactattgtggagtataa
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