Xenopus laevis (African clawed frog): 100127327
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Entry
100127327 CDS
T01010
Symbol
ranbp2.L
Name
(RefSeq) ranBP2-like and GRIP domain-containing protein 3 isoform X2
KO
K12172
E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03013
Nucleocytoplasmic transport
xla03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100127327 (ranbp2.L)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100127327 (ranbp2.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
100127327 (ranbp2.L)
03110 Chaperones and folding catalysts [BR:
xla03110
]
100127327 (ranbp2.L)
04121 Ubiquitin system [BR:
xla04121
]
100127327 (ranbp2.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100127327 (ranbp2.L)
Chaperones and folding catalysts [BR:
xla03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Cyclophilin
100127327 (ranbp2.L)
Ubiquitin system [BR:
xla04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
100127327 (ranbp2.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ran_BP1
IR1-M
Zn_ribbon_RanBP
VID27_PH
TPR_16
TPR_1
TPR_2
TPR_14
TPR_7
TPR_CcmH_CycH
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
100127327
NCBI-ProteinID:
XP_018102541
Xenbase:
XB-GENE-6252429
UniProt:
A0A1L8HGL2
A0A974DNL8
Structure
PDB
PDBj
LinkDB
All DBs
Position
2L:complement(113558720..113611204)
Genome browser
AA seq
2905 aa
AA seq
DB search
MRRSKAEIQRYVENAQNSASSPREKSMKGFLFARLYYEAKEYELAKRSVSSYISVQERDP
KAHRFLGQLFEIEGNVEKAVGCYKRSLELNPTQKDLTLRIAELICTLNIKDGRAEYWVER
ASKLFPGSPEIYRLKEQLLSSQGEAGWNQLFDLIQAELFARPNDVYVNLKLVDLFLSNQR
LEEAVLHCLKPERRALRTDIEWCSCVVRVFKEYLASKQGQKNTNMRMITKELLLAQCDVV
FLTLSKKDVQKSKEALERFDQALLSVKQSVSGTDASDLSVTFYEMRGHYYMHAGTLLLKM
AQSCEVQWKALIEPAALCYLLAYQVPKPKSKPVKGDDNGQGFLEELAFDRQSKSGHLLLT
LSHGKQNFISEIIETFANQCGQSILLKFLFEDNLSMQDSFMGSDDISYVENRVPDLSELS
QHDNGSLRIHNGDLQHLTWLGLQWHFLSTLPPLRKWLKQIFPRVPQETSRLESNIPESIC
LLDLEVFLLAVVQTSYLQLQDNNTTADPNRPRCLPLPICKQLFTDRQRSWWDAVYSLITK
KALPGTSAKLRSVIQHDLTTLRAQEKHGLQPAVLVNWARGLHKTGYSLNSFYDQKEYMGR
CVHYWKKLLPLLDLVKQKKSIPEPVDPLFKHFHNKDIKVSEVKDLEDEACIAFATLDLVD
GKTEDAIIAFESVKNVVAYWNLALIYQRKAEEIENDCLPAEEQEEFQECLLKCKGFLKMI
CDEYSAYPSIATSLPVPVETVFEMLDSVKQSLGEAMDDHSPAFMENHSVLTTSAIKHSTP
SPTKLTISPSKSARFSPKTPPRWAEDQKSLLEVLCNKVEALKKEVQELKHNNSNANVSPH
RWPNEGFESDTVADSYQGTQNFYTVPLTVSTSGPAAYYGQSPAYNSQHLLRPAANITPTK
TSVYAMNRLPPQQHMYTYPQQMHTPPTQQSSAGCVFPQEIYGPPLRFESPAAAILSPHNE
EFYNYNVPPASTNPPLPEPGYFTKPSTAMQHSKQEVPKVSDFGKGCLGQSTSEGQKPSPF
TVPMQSTPASSTFKFNSNFKSNDGDFTFSSSHAGASSAYTGSESLLGLLTSDRPTQEQGK
KSDFENIASDEKNMFRFGEKSFSPGFTVTGTQSQDKNPLVFGQSENIFTFKTPGKSTFKP
PTFGTQTKDAHNHSVESDAGSEHVADDDGPHFEPIIPLPEKVEVKTGEEDEEEMFCNRAK
LFRFDAETKEWKERGIGNVKILRHRLSGKIRLLMRREQVLKICANHYINADMKLKPNATS
DKSYVWHAYDYADEMPKPEQLAIRFKTVDEAAHFKAKFEEAQRLLAMAEAPAISAQHKNA
KDNLKLDASKVKEAPLPFGSQFILKRGEWQCDCCLATNAPTSTSCVCCQTPNKNKSSSIS
SVCISAPSFTFVKESATNKLAFGQQLLKDKDQWTCSKCSQKNDAGVSHCSSCQTQSQAKA
GISQPNIASSGFTNNTSAQGDNLAAVFGKKAGQWDCDVCYVRNEPSANKCISCQNTKPLS
KVSGTQAASFSFAAGADNSQKNFGAQFAKKEGQWDCDACYVRNEPLATKCISCQNTKLLS
KTTGTQAASFSFAAAADNSQKNFGGQFAKKEGQWDCSSCLVRNEASAPNCVACHSANPQI
TNKDVVPPALTPSGFKFGHNAEVGKTQQSLSAMFSCKQGQWECSTCLVINDAAKDTCAAC
QAAKPGSSASQSKEVPSTFGIKANSSQNFGQPAAGFNCGFSAKGFKFGISDEKASASNFT
FKAPATNEETKMVKDGFNFPVSAGSLSFKFGISEPDKTKEMSTGFMKGTSTNNKGSETAE
TTAQAEKIQQSPDKVLGQSVQSFSFADIAKSTEGIEFGKADPNFKGFSGAGQKLFTSSNQ
VNASNAQEAADDLYKTEERDDIHFEPIVQLPDKVDLITGEEDEKTLYSQRVKLYRFDATS
GQWKERGVGNLKILKNEVNGKLRVLMRREQVLKVCANHWITTTMNLKPLTGSDRAWMWLA
NDFSEGDAKLEQLAVKFKTPEQAEEFKIKFDQCQCLLLDIPLQTPHKLVDTGRTAHLIQK
AEEMKTGLKDLKTFLTDKAKPLDDSNAINTTDLEKQALADGTEPTYEWDTYDMRGDAHEE
TLDDSVYASPLASSPEKKNLFRFGDLSTSGFNFSFQPEPSPSKSPTKLNHSRVSVGTDEE
SDVTQEEERDGQYFEPVVPLPDLVEVTSGEENEQAIFCHRAKLYRFDKDSNQWKERGIGD
LKILQRLDNKSARVVMRRDQVLKLCANHRITTDINLQPMKGAERAWVWTAHDFSEGEGKV
ECFAVRFKLQEAADLFKEVFEEAKEAQAKDCLLTPVSSRGTTPRAASCGKAAIAILEETT
KERTDQQPEEDTSLTEASTPSPTDQPAKALVSPANFTFGSDVVKNIFGSEKQVPFAFGNT
SSTGSLFGFSFNASQSQGQQVQKQPPKVTLDFNATFKDAETTNALQKPSQSSGQSPIVSS
LSSSSSSSSSTLMQPMPARDKAADVPDADSSSDVLIVYVATPTPEQKALAETLLLPLTFF
CYKNKPGYVSDESDIDDEDFETAVKNLNGILYTEDKKDKASSRLSGCSKEPTAESDQDCI
IVWEKKPTPEEKAKADSLKLPPTFFCGLGSDTDEDKDNLEDFDTEVRKVKEAKGVPEADV
TSSPEAAIVSAAETSVSLPPKQEPDSTTSISQEPVDLSSKQELPKTDSKGFSTPSFSFGL
GEVSGVSFADLASTNSGDFAFGSKDTNFQWANTGAAVFGTLSQNKKGEDADGSDEEVVHS
DDVHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRAVGQWKERGVGDIKILFHKEKG
YYRVLMRRDQVLKVCANHVISTEIKISTLSTSNNSLVWTATDYSDGEGKVEQLAVRFKTK
ELTDSFQNKFEECQHNLQEESNPQH
NT seq
8718 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgcagtaaagcggaaatccagagatacgtagaaaatgcgcagaacagcgcgtca
tcacccagagagaaatccatgaaaggattcctttttgctagactctactatgaggctaaa
gaatatgaacttgctaaaagatctgtatcttcgtacataagtgtacaggaaagggaccca
aaagcacacaggttccttggacaactgtttgagatcgaagggaatgtggaaaaagctgtt
ggctgctacaagcgttcattggagttaaaccccactcaaaaggatcttactcttcgaatt
gctgagttgatatgtactctaaatatcaaagatggcagagcagagtactgggtggagaga
gcatccaaactcttcccaggaagtcctgaaatttacagactcaaagaacaactgctttcc
tcacaaggtgaagctgggtggaatcagctctttgatttaatacaggctgaactttttgca
agacccaatgacgtgtatgtaaatctcaagcttgtagatttgtttctgtccaaccaacga
ctggaggaagcagttttgcattgccttaagcctgagagaagagctttgaggactgatata
gaatggtgctcctgtgttgtccgagtatttaaggaatatctggcttcaaagcaaggacaa
aaaaataccaatatgaggatgataacaaaggaactgttgcttgcacaatgtgatgttgtc
tttttgacactttctaaaaaagatgttcagaagagcaaggaagcccttgaaagatttgac
caggccctcttgtcggtaaaacagtctgtgagtggtacagatgcttctgatctgtctgta
acgttttatgaaatgagaggtcactactacatgcatgctgggactctgctactgaaaatg
gctcagagctgtgaagttcaatggaaggctttaattgaacctgctgcactctgttatctt
ctggcttatcaggttccaaagccaaaaagtaagccagtaaagggggatgacaacggacaa
ggttttctagaagaattagcgtttgaccggcaaagtaaatctggtcacttattgctaact
ttgagccatggaaaacagaacttcattagtgagattatagaaacgtttgcaaaccaatgt
gggcagtctattttgctgaagtttctgtttgaggacaatttatcaatgcaagattctttc
atgggtagtgatgatataagctatgtcgagaatcgggtgccagacttaagtgagctttcc
cagcatgacaatggttctcttcgaatacacaatggggaccttcagcacctgacctggctt
gggttacagtggcactttctatcaactttacctccccttcgcaagtggcttaaacagatt
tttcctcgggtgcctcaggaaacttcaagacttgagtccaatattccagagtctatctgt
cttctggatcttgaagtatttttgctggcagttgtgcaaactagttaccttcagttgcaa
gataacaacacaacagctgatccaaacagacctcgatgtcttcctcttccaatctgcaaa
cagctctttacagataggcagcggtcctggtgggatgctgtttacagtcttattacaaaa
aaagctttacctggcacctcggcaaagctgcgttctgtgattcagcatgatcttactact
ctaagagctcaggagaagcatggcctgcaacctgctgttcttgttaattgggcaaggggt
cttcacaaaacgggttacagtctgaattccttctacgaccagaaggagtacatgggacgc
tgtgtccactactggaagaagctgttaccacttctagatttggtcaaacagaaaaagagc
attcctgagcctgttgatcctttgtttaagcactttcataataaagatattaaggtttct
gaagtaaaagacttggaagacgaagcatgcattgcttttgcaacattggatttagttgat
ggaaaaacagaggatgcaataattgcctttgagtctgttaagaacgtcgttgcctattgg
aaccttgctttgatataccagcgtaaggcagaagaaattgagaacgattgtttgccagca
gaagaacaggaagagttccaggaatgcctgcttaagtgcaaaggctttttgaaaatgatt
tgtgatgaatattcggcttatccctccattgcaacatcgttgcctgttcctgttgagact
gtgtttgagatgctggattcagtgaagcagagtcttggagaagcgatggatgatcatagc
ccagcattcatggaaaatcattcagttttgacaacttcagcaataaaacattccacgcca
tcacccaccaaactgaccatatcgccaagcaaatcagctcggttttctcccaaaacacca
ccacgttgggcagaggatcaaaagtccctgcttgaagtgctctgtaataaagtggaagca
ttgaagaaagaagttcaggagctaaaacacaacaattcaaatgcaaacgtgtcccctcat
agatggcctaatgaagggtttgagtctgatactgttgctgatagctaccaaggaactcaa
aatttctatacagttcccctaacagtttccacttcaggacctgctgcttactatggtcag
tcaccagcatataattctcagcatcttctcaggccagcagctaatattactccaacaaag
acatctgtgtatgcaatgaacaggctgcccccacaacaacatatgtatacctatccacaa
cagatgcatacaccaccaactcagcagagttcagcaggatgcgtttttccacaagaaatt
tatggtccaccactacgatttgagtctcctgcggcagctattttgtcaccacataatgaa
gaattttacaattacaatgttccaccagccagcacaaatccacccctgccagaacctggt
tattttactaagccttccacagcaatgcagcactccaaacaagaagttccaaaagtgtct
gattttggaaaaggttgcttaggacagtcaacatctgaaggtcaaaaaccatctccattt
actgtaccaatgcagtctactccagcatcatcaactttcaagtttaactccaactttaaa
tccaacgatggggattttacattttcatctagtcatgcaggagcaagtagtgcttatact
ggcagtgagagccttttagggcttctcacatcggatagaccaacccaagagcaaggtaaa
aaatctgattttgagaacattgccagtgatgaaaaaaacatgttcagatttggggaaaaa
agcttttcaccaggtttcactgtaactggaacacaaagccaagataagaatcctttagtc
tttggccaaagtgaaaatatttttacctttaagactcctggaaaatctacatttaagccc
ccaacatttggtacccaaactaaagatgcacataaccacagtgtggaatcagatgcagga
agtgaacatgttgctgatgatgatgggccacactttgagcctattatacctctccctgaa
aaagttgaagttaaaacaggagaagaggatgaagaagaaatgttttgcaatagagcaaaa
ctatttcgatttgatgcagaaactaaagaatggaaggaaaggggtattggaaatgtgaag
attttaagacacaggttgtctggcaagattcgcctgctaatgagacgtgaacaggtgcta
aagatttgtgcaaatcactacataaatgcagatatgaaactgaagccgaatgccacatca
gataagtcttatgtgtggcatgcttatgactatgcagatgaaatgcccaaaccagagcag
cttgctattcgatttaaaactgtagatgaggctgctcatttcaaggcaaaatttgaggaa
gcgcaaaggctactggctatggcagaagcccctgctatttcagctcaacataaaaatgca
aaagacaacctaaagttagatgctagcaaggtaaaagaagcaccccttccttttggatca
caattcattttgaaaagaggagaatggcaatgtgattgctgccttgctacaaatgcacca
acttccacttcatgtgtgtgctgtcaaacgccaaacaaaaacaaaagcagctcaataagt
tctgtatgcatttctgcaccatcgtttacatttgttaaagaaagtgcaactaacaagctt
gcatttggtcagcagcttttgaaagataaagatcaatggacatgtagtaagtgttctcag
aaaaatgatgcaggagtcagccactgttcctcctgccaaacccaaagtcaagcgaaggct
ggcatttctcaacctaacatagccagttctggttttacaaataatacatctgctcagggt
gataacttggcagccgtatttggaaagaaagcaggtcagtgggattgcgatgtgtgttat
gttagaaatgaaccttcagcaaataaatgtatttcttgtcaaaatacaaagccattgagt
aaagttagtggaacccaagcagcatcattttcatttgctgctggtgctgataattcacaa
aagaattttggtgcccagtttgcaaagaaggaaggacagtgggattgcgatgcatgttat
gttagaaatgaacctttagcaactaaatgtatttcttgtcaaaatacaaagctattgagt
aaaactactggtacccaagcagcatcattttcatttgctgctgctgctgataattcacaa
aagaattttggtggccagtttgcaaagaaggaaggacagtgggattgcagttcatgtctt
gtcagaaatgaagcatctgctccaaactgtgtagcttgccatagtgccaatccacagata
acaaataaagatgtggtgccacctgccctgacaccatctgggtttaaatttgggcataat
gcagaggttggtaaaacacaacaaagtctatcagctatgttttcatgcaaacagggtcag
tgggaatgcagtacatgcttagttataaatgatgctgcaaaagacacttgtgctgcttgc
caggctgctaaacctggctcatctgccagtcaaagcaaagaggttccttctacctttggt
attaaagcaaattcatcgcagaattttggccaacctgctgcaggatttaattgtggtttc
tccgcaaaagggttcaaatttggtattagtgatgaaaaggcatcagcatcaaattttaca
tttaaagcccctgctaccaatgaagaaacaaagatggtaaaagatggcttcaactttcca
gtgtctgccggttccctttcttttaaatttggcatttctgagcctgataagacaaaggaa
atgtctactggtttcatgaagggtacttccacaaataataaaggttctgaaacagctgag
actactgcacaagctgaaaaaatacaacaaagccctgataaagttctcgggcagtctgta
cagagcttttcttttgctgatatcgcaaaaagtactgaaggaattgaatttgggaaagca
gaccccaattttaaaggcttttctggtgcagggcaaaaattatttacctccagcaatcaa
gtaaatgcatctaatgcacaggaggctgcagatgatctttacaaaactgaggaacgtgat
gacatccattttgaaccaatagtccaacttcctgataaagtggatcttataacaggggaa
gaagatgagaaaactctttattctcaaagggtaaaactgtacaggtttgatgcaacaagc
ggacagtggaaagaacgtggagtaggaaacttaaagattcttaaaaatgaagtcaatgga
aaactgagagtgctcatgcggcgggagcaagttcttaaagtgtgtgcaaaccactggata
acgactacaatgaatctgaaacccttaactggctctgatcgtgcctggatgtggctagct
aatgatttttctgaaggagatgcaaagttagagcagttagctgtaaagtttaaaacacct
gagcaggctgaagagtttaaaattaagtttgatcagtgtcagtgcctcttattagatatt
cctctgcagactccgcataagcttgtagacactggaaggacagctcatttgatacaaaaa
gctgaggaaatgaaaactggcctaaaagatctgaaaacatttttaacagataaagccaaa
cctttggatgactcaaatgcgattaacaccactgacctagagaaacaggcacttgcagat
ggcactgaaccaacgtatgagtgggacacatacgatatgagaggagatgcacatgaagag
actttagatgactctgtatatgcctctccactagcaagtagcccagagaagaaaaatctg
tttaggtttggtgacctatcaacatccggttttaattttagcttccaaccagaaccaagt
ccatcaaagtctccaacaaaattaaatcatagcagggtgtctgtgggtacagatgaggaa
tctgatgttacccaggaagaagagcgagatggccagtactttgaacctgttgttccttta
ccggatttggttgaagtaacaagcggggaagaaaatgagcaggcaatcttctgccataga
gcaaaactttacaggtttgataaagactcaaatcagtggaaggaaagagggattggggat
ttaaagattttacagagattggataataaatctgcccgagtggtgatgagaagagatcag
gtactgaaactctgtgccaatcatcgcataacaactgatataaacctacagccaatgaag
ggggctgaaagagcctgggtatggactgcgcatgacttttctgaaggagaaggaaaagta
gaatgttttgctgtacggtttaagctacaggaggctgctgacttgttcaaagaggtgttc
gaagaggctaaagaggcacaagcgaaagactgtttgctcactccagtttcttctcgtggt
acaacaccaagagctgcttcatgtggtaaagctgccatagcaatactagaggagactaca
aaagagagaacagatcagcagcctgaggaagacacatccctcacagaagctagcacacca
tctcctacagatcagcctgcaaaggccctggtttctcctgcaaactttacgtttggatcc
gatgttgtaaagaatatctttggtagtgagaagcaggtgccttttgcatttggcaacaca
tcatccacagggtctctgtttggcttcagcttcaacgcttctcaaagccagggtcaacaa
gtgcagaagcagcctcccaaagttacgctggattttaatgctacatttaaggatgcagag
acaacaaatgctctccagaagccttctcaaagcagtggccagagtcctatagtttcttct
ctgtcatcatcatcatcctcctcatcatcaacccttatgcagcccatgccagccagagat
aaagctgctgatgtccctgatgcagatagctcttctgatgtactcattgtatatgtggcg
acccctacccctgagcagaaagccttagcagaaacactgcttttgcccttaacatttttc
tgctacaaaaacaagcctggatatgtcagtgatgagagcgacattgatgatgaggacttt
gagactgctgtaaaaaatctgaatggtattttgtatacagaagataagaaagataaggca
tcatcaagactttcaggttgtagcaaggaacctacagctgaatctgatcaggattgtata
atcgtttgggaaaagaagcccactcctgaagaaaaagccaaagcagacagtctgaagctc
ccaccaacgtttttctgtggtttgggtagcgacacagatgaagacaaggataatctagaa
gactttgatacagaagttagaaaagttaaggaggctaaaggagttccagaagcagatgta
actagttcccctgaagctgccatagtaagtgcagctgaaaccagtgtgtctctgccccca
aaacaagaacctgattccaccacaagcatttcccaggaacctgtagacttgtcctctaaa
caggagctccccaaaacagactcaaaagggttttctactcctagtttctcttttgggctg
ggtgaagtttctggagtttcttttgcagatttagcatctacgaattctggtgattttgcc
tttggttctaaagataccaacttccagtgggccaataccggggcagccgtttttggtact
ctgtcccagaacaaaaagggtgaggatgcggatggtagcgatgaagaagtggtgcacagt
gatgatgtacactttgagcccattgtgtctttaccagaggtggaggtaaaatcaggggaa
gaagatgaagagatccttttcaaggagagagcaaagttgtaccgctgggatagagctgtg
ggccagtggaaagagagaggagttggtgacataaaaatcctttttcacaaagagaaggga
tattatcgtgttctgatgcgtcgagaccaagtactgaaagtgtgtgctaatcacgtcatt
tcaactgaaattaagattagcaccttaagtacatcaaacaactcactggtatggacagca
acggactattcagatggtgaaggtaaagtggaacaactggcagtcagattcaagactaag
gagttgaccgattctttccagaacaaatttgaagaatgccagcataatttgcaagaagag
tctaatcctcaacattaa
DBGET
integrated database retrieval system
