Xenopus laevis (African clawed frog): 100158290
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Entry
100158290 CDS
T01010
Symbol
snrnp200.L
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100158290 (snrnp200.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
100158290 (snrnp200.L)
Enzymes [BR:
xla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100158290 (snrnp200.L)
Spliceosome [BR:
xla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100158290 (snrnp200.L)
Complex C
U5 SnRNP specific factors
100158290 (snrnp200.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
100158290
NCBI-ProteinID:
XP_041442914
Xenbase:
XB-GENE-981979
UniProt:
A0A8J1MMC2
LinkDB
All DBs
Position
3L:complement(132718241..132761203)
Genome browser
AA seq
2135 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQKTK
PQMQEERRLKRRKRDEDRHDMNKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNDKLRDKDRRREVDQLLGQTDDTRYHVLVNLGKKIS
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDAYGEVRDEASDDDMDGDEAVVRCTL
SANLASSGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTAGDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMSKMESDTELSKYL
YQLQETEKEDLIREARGHRDKIRQLNVDMDLESMETEQGEAFTPRQVLDLEDLVFAQGSH
FMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFASDEQLVPVEKLPKYAQSGFEGFKTL
NRIQSKLFKAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINVDGTINVDNFKIIYI
APMRSLVQEMVGSFSKRLSTYGITVAELTGDHQLCKEEINATQIIVCTPEKWDIITRKGG
ERTYTQLVRLIILDEVHLLHDDRGPVLESLVARAIRNIEMTQEDVRLIGLSATLPNYEDV
ATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQV
LVFVHSRKETGKTSRAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYG
FAIHHAGMSRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRW
TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQVVGRLPDML
NAEVVLGNVQTAKDAVNWLGYTYLYIRMLRSPNLYGISHDDLKIDPLLEHRRLDLIHTAA
LLLDKNNLVKYDKKTGNFQVTELGRIASHFYITNDSVQTYNQLLKPTLSEIELFRVFSLS
SEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADM
VYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVK
KIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLDLSVHLQPITRSTLKVE
LTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEP
LPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLY
QDKFPFFNPIQTQVFNTIYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITP
MEALAEQVFMDWFEKFQDRLYKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQ
RKNVQNVSLFIVDETHLIGGANGPVLEVICSRMRYISSQIERPIRVVALSSSLSNAKDVA
HWLGCSATATFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAIIKHSPKKPIIV
FVPSRKQTRLTAIDILTTCAADVQRQRFLHCTEKDLAPYLEKLSDGTLKETLLNGVGYLH
EGLSSLERRIVEQLFNTGAVQVIVASRSLCWGLNIAAHLVIIMDTQYYNGKIHAYVDYPI
YDVLQMVGYANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIV
TKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEHTLSDLEQSKC
ISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYESIPIR
HHEDNLLRQLAQKVPHKLTNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILGKAVR
LIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLRQLPHFSSEHIKRCTDKEVES
VFDIMEMEDEERSELLQLSDSQMADVARFCNRYPNIELSYEVAERDSIRSGGAVVVLVQL
EREEEVTGPVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPATGN
HNYTLYFMSDAYMGCDQEYKFSVDVKEAESDSDSD
NT seq
6408 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtaacagccagaagcttgcagtatgaatacaaagcgaactctaaccttgta
cttcaagctgatcgctccctgatagaccgtactcgcagagatgagcccacgggagaggtc
ctgtcattggtggggaagttggaaggaactcgtatgggtgacaaagctcaaaagaccaag
ccacagatgcaggaggaaagacggcttaagagaagaaaacgagatgaagacaggcatgac
atgaacaagatgaaaggatacactctgctgtctgaaggtatagatgaaatggtgggaatc
atatacaaacccaaaaccaaggagacacgagaaacctatgaagtgcttctcagcttcatc
caggctgcactaggagatcagccacgagacatcttgtgtggggcagcagatgaagttctg
gcagtgctgaagaatgacaaacttcgggataaagatagaaggagggaagtggatcaatta
ctagggcaaactgatgatactcggtaccatgtacttgtgaacctgggcaaaaagatttca
gactacgggggagacaaagaaattcaaaatatggatgacaatattgatgagacatatggg
gtgaatgtgcagtttgaatcagatgaggaggaaggagatgaggacgcatatggagaggtg
cgagatgaggcatctgatgacgatatggatggtgatgaagcggttgtgcgatgtactctg
tctgcaaatcttgcatcttctggagaattgatgagttccaagaagaaagatctccatccc
cgggacattgatgccttttggttgcaaagacaactcagccgcttctatgatgatgctatt
gtgtcccagaaaaaagcagatgaagttctggaaattctaaagactgcaggagatgatcgt
gaatgtgaaaaccaattggttcttttgctggggttcaacacatttgactttattaaagta
ctgcgacaacatcgtatgatgattctgtattgcacgctcttggcaagtgctcagagtgaa
gcagaaaaggaaaggataatgagcaaaatggagtccgatacagaactctctaaatatcta
taccagctacaggagacagaaaaagaggatctgattcgggaggcgcgtggacacagagac
aagattaggcagttaaatgtagacatggatttggaaagcatggaaacggaacaaggagag
gctttcactccacgtcaagtcttggacttggaggatttggtctttgcccagggtagtcat
ttcatggctaacaaacggtgccaactgcctgatggctccttcagacgtcagcggaaaggg
tatgaagaggtgcatgtgcctgcccttaaacccaaaccttttgcttctgatgagcaactg
gtcccagttgaaaagcttcctaaatatgctcagtctggctttgaaggcttcaagactcta
aatagaatccagagcaagttgtttaaagctgcattggaaacagatgagaacctgttgctt
tgtgctcccaccggagctggtaaaacaaatgtagctctgatgtgcatgcttcgggagatt
ggaaaacacataaatgtggatggcaccatcaatgtggacaacttcaaaataatttacatt
gctcccatgagatccctggtgcaggaaatggtgggcagcttcagcaagcgattgtcaaca
tatggcattaccgtggcagagttgacaggagatcaccagctgtgtaaagaagagatcaat
gccacacagatcatagtttgtaccccagaaaaatgggatatcatcacccgtaaaggaggg
gagagaacatacactcagctcgtccgtctgatcattctggatgaagtccacttgctgcat
gatgatagaggtccggtgctggaatctttggttgctcgggccatccgtaatattgagatg
acacaggaggatgtccggcttattggtcttagtgctactttgcccaactatgaggatgta
gccacatttcttcgcgtggaccctgccaaggggctcttttattttgacaacagttttcgt
ccagtgccactggaacagacctatgtaggtattacagagaaaaaggccatcaaacgcttc
cagattatgaatgagattgtttatgagaaaatcatggagcatgccggcaagaaccaggtg
ctggtgtttgttcattccaggaaggaaactggcaagacgtcccgtgctatcagagatatg
tgcctggagaaggacaccctgggtctgtttctgagagagggttctgcttcaactgaagtt
cttcgtactgaagccgagcaatgcaagaacctggaactgaaagatctcctgccttatggg
tttgctattcaccatgctggtatgagcagagttgacaggacactagtggaggatctgttt
gccgataaacacattcaggtcctggtttccacagcaactctggcttggggtgtcaatctc
ccagctcacactgttatcattaaagggacacaggtttatagtccagagaagggtcgttgg
acagagcttggtgccttggatatcctgcagatgcttggtagagctggacgtccccagtat
gatacaaagggtgagggaattctcatcacctcacacggggagttgcaatattacctgtct
ctgctgaaccagcagcttcctattgagagccaggtggttggaaggcttccagacatgctg
aatgcagaagtggtcttgggaaatgtacagactgctaaggatgctgtgaattggttaggc
tacacatacctatacatccgtatgttgcgctctccaaacctgtatggaatctcccacgat
gaccttaagattgaccctttgctggaacaccgacgtcttgatctaatacatacagctgcc
cttctcctcgacaagaacaacctggtgaaatatgataagaagactggtaatttccaggtt
actgagctgggtcgtattgccagtcatttctacatcaccaatgattccgtacaaacctac
aaccagctgttgaagccaactcttagtgagatcgagctttttcgtgtgttctctctttcc
tctgagttcaagaatatcactgtcagagaggaggaaaaactagaactgcagaagttgcta
gaaagagtacctatccctgtcaaagaaagcatagaggagccaagtgctaagatcaacgtg
ctgctgcaggctttcatttctcagctaaaactggaaggatttgctctgatggcagacatg
gtgtatgttacacagtctgcaggccgtctcatgcgagcaatatttgaaattgtccttaac
cgagggtgggcccaactgactgataaaactctgaatttgtgcaaaatgatcgacaagaga
atgtggcagtccatgtgtcctttacgccagttcaggaagttgccagaggaagtggtgaag
aagattgaaaaaaagaactttccttttgagcgtctttatgatttgaatcacaatgagatt
ggtgaactcatccgtatgcccaaaatggggaaaacaatccataaatacgttcacctgttc
cccaagttggatttgtctgtgcatctgcaacctatcactcggtccaccctcaaagtagag
ctcacaattaccccagatttccagtgggatgagaaggttcatggttcctctgaagctttc
tggatcctagtagaagacgtggacagtgaagtaatcctgcaccatgagtacttcctgcta
aaggccaaatacgcacaagatgagcatcttgttacgttttttgtaccagtctttgagcct
cttccacctcagtactttattcgagtggtgtctgatcgctggctctcatgtgaaacgcaa
ctcccagtatctttccgccatctgatccttcctgaaaagtacccaccacctactgagctg
ctggatctacagcccctgccagtttctgcccttaggaacagtgcatttgagagcttatac
caagataaatttccattctttaaccctatccagacccaagttttcaacaccatatacaac
agcgatgataatgtctttgtgggagctcccacgggaagtgggaagaccatttgtgctgaa
ttcgccatactcagaatgctgcttcagaattccgagggccggtgtgtttatataacccct
atggaagctctggctgaacaggtgttcatggactggtttgagaagttccaggacaggtta
tataagaaggttgtactgctcactggtgagaccagcacagatctgaaacttttggggaag
gggaacattattatcagcaccccagaaaagtgggatatcctgtcccgtcgttggaagcag
aggaagaatgtgcagaatgtcagtctctttattgtagatgagacgcacctcatcggagga
gccaatggacctgtgcttgaggtaatctgttccagaatgcggtacatctcctcccagata
gagaggcctatccgtgtcgtggcccttagctcctctctctccaatgccaaggatgttgct
cactggctgggttgcagtgcaactgccacatttaacttccatcccaatgtgaggccagtt
cctctggaattgcatatacagggctttaacatcagccacacacaaacgcggctgctttct
atggctaagccagtttaccacgccatcataaagcactctccaaagaaacccatcatcgtt
tttgttccgtctcggaaacagacgcgtctcactgctattgatattcttactacctgcgca
gcggatgtgcagagacagaggttcctgcactgtacagagaaggatttggctccgtacttg
gaaaagttgagtgatggaactctgaaggaaaccttgttgaatggggtgggctacctgcat
gaaggcctgtcatcactggagagacgaattgtggagcagttattcaacactggtgcagta
caggtgattgtggcctcgcgcagtctttgctggggacttaacattgcggctcatctggtg
attatcatggacactcagtactataacggcaagattcatgcgtacgttgattatcccatc
tatgatgtccttcagatggtgggatatgccaaccgccccctgcaggacgatgaagggcga
tgtgttattatgtgccaaggttcaaagaaggatttctttaagaagttcctgtatgagcct
ttgcctgtagaatcccacttggatcactgcatgcacgaccacttcaacgcagagattgtc
accaagactattgagaataaacaggatgctgtggattatttaacttggactttcctctat
aggcgcatgacccaaaaccccaactactataatcttcagggcgtttctcacaggcacctt
tctgatcacctttctgaactggttgaacacacactaagtgaccttgagcagtccaaatgc
atcagcattgaagatgaaatggatgtggctcctctaaacttaggaatgattgctgcttat
tactacatcaactacaccaccattgaactcttcagcatgtctctgaatgccaagaccaaa
gtgcggggtcttatagaaataatatctaatgccgccgagtatgaaagcatacccatacgt
catcacgaggacaatctgctccgccagcttgcacagaaagtaccccacaaactcaccaac
cccaaattcaacgatcctcatgtgaagaccaatttgctgcttcaggctcatctctcccga
atgcagctgagtgcagagcttcagtcagataccgaggagatcctcggaaaggcagttcga
cttatccaggcctgtgtggatgtgctttccagtaatggctggctaagcccagctcttgct
gccatggaactggcccagatggttactcaggctatgtggtccaaggattcctatctgagg
cagctgcctcacttcagctcagagcacatcaaacgatgcacagacaaggaagtggagagt
gtatttgatattatggagatggaggatgaagaacgttcagagttactgcagctttcagat
tcccagatggcagatgtagcaagattctgcaaccgctaccccaacatagaactgtcctac
gaagtggcagagagagactccatcagaagtggtggagctgtcgttgttctggttcagttg
gagcgtgaggaggaagttacaggacctgttatagctcctctcttcccacagaaacgcgag
gaaggctggtgggttgtgatcggcgattccaagtccaacagtctgatttcaatcaagaga
ctgaccctgcagcagaaagctaaggtaaagctggactttgtagcacctgctactggaaac
cacaactacaccctgtatttcatgagcgacgcatacatgggttgtgaccaggagtacaag
ttcagtgttgacgtgaaggaggcagagagtgacagtgactctgattag
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integrated database retrieval system
