Xenopus laevis (African clawed frog): 100174804
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Entry
100174804 CDS
T01010
Symbol
nup98l.S
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100174804 (nup98l.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
100174804 (nup98l.S)
03036 Chromosome and associated proteins [BR:
xla03036
]
100174804 (nup98l.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100174804 (nup98l.S)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
100174804 (nup98l.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
100174804
NCBI-ProteinID:
XP_041440603
Xenbase:
XB-GENE-22169583
UniProt:
A0A8J1MGE1
LinkDB
All DBs
Position
2S:complement(167500515..167567351)
Genome browser
AA seq
1786 aa
AA seq
DB search
MFNKTFGSPFGTGNGAFGATSTFGQTTGFGTTPATAFGSAGFGTNTSTGGLFGNAQTKPG
SLFGTNTFNQPATSSASSGFGFGTSTGTTNSLFGSTNTSNSLFSAQNNAFGQTKPTTFGN
FGTNASTGGLFGTTNTANPFGGASASLFGASTFTSAPTGTTIKFNPPSGTDTMAKGGVTT
NISTKHQCITAMKEYESKSLEELRLEDYQANRKGPQNPVGAPTGTGLFGTPAATSSTATG
MFGSTAANSFSFAGNKTTFGTAATGAFGTNTGALFGQPANQPAASLFNKPFGNATTTQTT
GFSFGNTSTLGQPQTSTMGLFGSNQATQPGGLFGTTTNTNAANAFGTGASLFGQPNATTF
GGSSTLFGNKPAGFGTTTTSAPGFGTTTGGLFGNKATLTLGTNTNASNFGFGSNTAGTGL
FGNKPATGTIGPSLGTSFGTALNPGQTSLFGGNQPKLTGTLGTGAFGGTGFNSTSTGLFG
APQAAATTLTDFNASAAQQMFLQQQYNALRYSPFPDSPLFMNPISDPKKKEELLKPTNPA
AQKAVLTPTHYKLTPRPAARVRPKALQYSGAAKNQLFDALDDDVPVLSSGVFMPKKSIKQ
LDLKYLKNSSLFSQKSKDLDEVVPPTPETQDRSVENHHADEENDEEAATTYPSPFSRPLP
QSQEKKQFNNMDDTIVALNMRKSGRIGLENSSNDVSFNEDSLRDTEILDASPHPAGITLM
RDSYYTIPSMEELARSVDENGECIVDGFTIGREGFGSIYFDGIINLTNLDLDSIVHIRRK
EVIVYVDDQNKPPLGEGLNRSAQVTLDEVWPVDKTTRCTITSPERLNEMNYKAKLENASR
KQGAQFVDYRPESGSWVFKVNHFSKYGLQDSDEEDDQLNNAEAKKLKAAPVPPQGKPPPL
QQATLPGKVTPPPQSPAVDQLDRVLELDSDMADITQDQDLDSVAEEQDITEEQEPLSASS
HIASSLGINPHALQVMKASLLLEEEDGEMINRFSSFPSSMDPYPDVRSPRLFPSSHAKRT
SSMGLLQSKFASPSISRISETAQGSHSPRILPVTPWSVPAPLAPTFVIPRPAPETHLRTV
GTRRQQELVPLEKSVTHGRGSLLIDMGLFMGRSFRVGWGPNWTLVHNGDKLTERLNAEED
QNMDTIDYGFLPKPTSAKSLTESPFKVHMEKLSLEQKSRELQSYLMPLEIELKNSSVDRS
AQCPHFKPNAGVAAIHDYAGWVRNLSNEAGELEAVVKQWGLTWTLCESLWGQLKELEASL
DEPNEYVRNLERRKAFSHWLAHTAEERIEEEVSLYGPERHVEAVFSFLTGGRISDACRLA
QKSGDHRLSLLLSQMVGSQEMRELISLQLVDWNKLQVDHYIQEERLRVFCLLSGTPVWRS
SDNRSINVCSQLDWKRTLAVHLWYMLPPTATIAQALRLYERAFQEHEEGEPYACYPLPPY
LEDCSISLGDEPSAKFSSLQRDVCVHLLKLYSERQYDLCQLLDPSSVTPDPLDYRLSWHL
WMVLQALNYTHLSEHRQGTLHASYAAQLENVGLWEWAIFVLLHIPHPHIREAGVRELLNR
QCVVRESPESLAKENFLIHRLCVPAQWVHEAKAIRSRRDGDRHKEALYLLKGHQWNPCHK
LVTRHLAADAVINENYRYLQSFLGELSNPEHCKHIQDWETAGKVYLDYIRVIDMLNLIQQ
DESSGCELEKLHTKVMSLCKWVELIHCYTAKDRLAQSEMAKRVANILRVVLSLQQPPESM
SDSSEPRVPLRLLAPHIGRLPMPEDYALEELRGLTQSYLRELICDS
NT seq
5361 nt
NT seq
+upstream
nt +downstream
nt
atgttcaataaaacatttggaagcccctttggcactggcaatggtgcgtttggcgccacc
tcaacttttggacagacaactggctttgggaccacccctgccacggcatttggctctgca
gggtttggcacaaacacaagtaccggggggctgtttggaaacgcacagaccaagccaggt
agcttgtttggaaccaatacctttaaccagccagcaacttcctctgcaagctcaggcttt
ggctttgggacctcaactggaactacaaacagtttatttggctctactaacacaagcaac
agcctcttctccgcacagaacaatgccttcggacagaccaaacctacaacctttggaaat
tttggaacaaacgccagcactggaggcctcttcggcaccacgaacacggcaaatccattc
ggtggggcctctgcatctctgtttggcgcctcaacattcacttctgctccaacaggaacc
acaattaagtttaatcccccatctggcacagacaccatggcaaaaggaggagtcactacc
aacatcagcaccaagcaccagtgtattactgccatgaaggaatacgagagcaagtccctt
gaggaacttcgtcttgaagattaccaggcaaataggaagggcccccagaatcctgttggt
gcacctacaggaacaggcttatttggcaccccagcagcaacttcaagcactgcaaccggt
atgtttggatctactgcagcaaacagcttctcctttgctgggaataaaactacatttggc
acagcagccaccggtgcatttggaacaaatactggggctctctttggccagcctgctaat
cagccagctgctagcctgtttaacaagccctttgggaatgcaacaactacacaaactact
ggcttttcatttgggaacacaagtacacttggacaaccacaaacaagcactatggggctc
tttggatcaaaccaagccacacagcctggtggtctctttgggacaacaaccaatacaaat
gctgccaatgcatttggcactggagctagcctgtttgggcaacctaatgctacaactttt
ggaggcagctcgaccctgtttggtaacaaacctgccggttttgggacgaccacgaccagt
gcccctggatttggcactaccactggcgggctctttggtaacaaagcaaccctgacttta
ggaaccaatacaaacgcttccaattttgggtttggctcgaacaccgcaggaaccggcctg
tttggcaataagccagcaacgggaaccatcgggcccagccttgggacaagctttggaaca
gcgctaaaccctggccagacatctttgtttgggggcaatcagcctaaactgactggtaca
cttgggacaggagcgtttggtggtaccgggtttaacagcacctcaacaggcctatttgga
gctccacaggctgcagcgacaaccctgactgatttcaatgcttcagctgcacagcagatg
ttcctacagcagcaatacaatgcacttagatattcccccttcccggactcccctctgttc
atgaaccccatctctgatccaaagaagaaagaggagctcttgaaacccaccaacccagct
gcccagaaagctgtattgactcccacacactacaagctaactcctcgcccagcagccaga
gtacgtcccaaagcattgcagtacagtggagcagccaaaaaccaactctttgatgccttg
gatgatgatgtgccggtcctgtccagtggtgtgttcatgcccaagaaaagcataaaacaa
ctggacttgaagtacctgaagaacagcagcctattttcccaaaagagcaaagatttggat
gaggtggtgccaccgactcccgagactcaagacagatctgttgaaaaccaccatgctgat
gaagaaaacgatgaagaggcagccactacatacccatcccccttctccaggcccctccca
caaagccaggaaaaaaagcagtttaacaatatggatgacaccattgtagcactgaatatg
cgcaagtctgggagaatcggactggagaacagcagcaacgatgtctcctttaatgaggat
tctcttcgagatacagaaattcttgatgcttctccccaccctgcaggaattaccctaatg
agggacagctattacaccatcccatccatggaggaattggccagaagtgtggatgagaat
ggggaatgtatagtcgatggcttcactattgggcgggaaggtttcggatcaatatacttt
gatggaatcattaatctgaccaatttagatcttgattcaattgtacacatccgcaggaag
gaggttattgtgtatgtggatgaccagaacaagccccctcttggtgaaggtttgaacaga
tctgcccaggtgaccctggatgaagtgtggcccgttgataagaccacgcgttgcacgatt
acaagtcccgagcgactgaatgaaatgaactacaaggccaagttagagaacgcctctcgt
aagcagggggcccagtttgtggattatcggccggagagtggttcctgggtgttcaaggtg
aatcacttctctaagtatggcttgcaggactctgatgaggaagatgatcagcttaacaac
gcggaggctaaaaagctgaaagctgcccctgttcctcctcaaggcaaaccgcctcctctc
caacaagcaactctccctggaaaagtcacccctccaccccagagtccagcggtagatcaa
cttgatcgggtgctcgaactggacagcgatatggctgatattacccaggaccaagatctg
gattctgttgcagaggagcaggacatcactgaagaacaggagcctttatctgcatcttcc
cacattgcatcttccctgggtattaatcctcatgccctgcaggtgatgaaagcttcgctg
ctactggaggaagaggatggagaaatgattaatcgcttcagcagtttcccttccagtatg
gacccatacccagatgttaggtctccccgccttttcccatcatcccatgcaaagaggact
tcctctatgggactgctgcagtctaaatttgcatccccctccatatcccggataagtgag
actgctcaaggctcccacagtcccagaattcttcctgttacaccatggtccgtcccagca
cccctagctcccacctttgttataccccgccctgctccagagactcatctgaggactgtg
ggaacccgaaggcaacaagaactggttccactagagaagtctgttacacatgggcgcggc
tctcttctgatcgacatggggctgttcatgggcaggtcgtttcgtgttggttggggcccc
aattggacccttgttcataatggtgataagctaactgagagactgaatgcagaagaagac
cagaacatggacactatcgattatgggtttctacctaagcccacgtctgctaaatctctc
acagagtctccatttaaagttcacatggaaaagcttagcctggagcagaagagcagagag
ctgcagtcgtacttgatgccactggagatagagctgaaaaacagcagtgtggatagatct
gcccagtgcccccactttaagccaaacgctggagtcgctgccattcatgactatgcagga
tgggtcaggaacttgtccaatgaggctggagagcttgaagcggtcgtgaagcagtggggt
ctgacgtggaccttgtgtgaatctctctggggccaactgaaggagctggaggctagtttg
gatgagccaaatgagtatgtgaggaacctggagaggaggaaggctttctcccactggctg
gctcacactgcagaggaacgtatagaggaggaggtgtctctgtacggcccagagagacac
gttgaagccgtatttagtttcctaacggggggcaggatcagtgacgcttgccgtctggca
cagaaatctggtgatcacaggctgtccctgctgctctctcagatggtcggaagccaagaa
atgcgggagctgatttccctgcagctggtggattggaataaactgcaggtggatcattat
atccaggaagagaggctgcgtgttttctgcttgctctctggcactcctgtgtggcgctct
tctgataacagaagcataaacgtctgctctcaattggactggaagcgaacgctggccgtt
catctctggtacatgctccctcccactgccaccattgctcaggccttaagactgtacgag
cgggcctttcaggagcatgaagaaggggagccgtatgcctgttacccgctccctccctat
ttggaagactgtagcatcagcctcggggatgaaccttcagccaaattctcctccctgcag
agagatgtctgtgtccatttgctgaaactgtacagtgaaaggcaatacgatctgtgtcag
ttgttggaccccagtagtgtgaccccagatcctctggactacagactcagctggcactta
tggatggtcttacaggctctaaattatacccatttgtctgagcatcgccaggggacgctt
catgccagttatgctgcccagctggaaaacgtcgggctctgggaatgggccatatttgta
ctgctgcacatcccacatccacacatccgtgaagcaggtgtccgggagttgctgaatagg
cagtgtgttgtgcgggagagcccagagtctctggcaaaagagaatttcctaattcaccgt
ctctgcgtcccagcacaatgggtccacgaagccaaagcaatccgctccagacgggacgga
gaccggcataaagaggccttgtatttactaaagggccaccaatggaatccctgccacaag
ctggtgacccgacacttggctgcagatgccgttattaatgagaactacagatacctgcag
agctttctgggtgagctgtccaaccccgagcactgcaagcacattcaggactgggagact
gcagggaaggtctatctggattatatccgtgttattgacatgctcaacctgattcagcag
gacgagagctccggctgtgagttggaaaagttacacaccaaagtaatgtctctgtgtaaa
tgggtcgagctgatccactgctacacggccaaagatcgattggcacagtcagaaatggcg
aaacgcgttgccaacatcctccgagtggtgctgagtctgcagcagcccccagaatccatg
tcagactcttctgaaccccgtgtgcccttaagacttcttgccccacatattgggcgcctc
cctatgcccgaagactacgccctggaggaactccgaggcctcacccagtcttatttaaga
gaactgatttgtgacagttaa
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integrated database retrieval system
