Xenopus laevis (African clawed frog): 100191020
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Entry
100191020 CDS
T01010
Symbol
pcdh1.L
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
100191020 (pcdh1.L)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xla01009
]
100191020 (pcdh1.L)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xla04515
]
100191020 (pcdh1.L)
Protein phosphatases and associated proteins [BR:
xla01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100191020 (pcdh1.L)
Cell adhesion molecules [BR:
xla04515
]
Cadherins
Protocadherins
100191020 (pcdh1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_4
TMEM154
Mid2
EphA2_TM
DUF6377
SLC3A2_N
MLANA
MAP17
Motif
Other DBs
NCBI-GeneID:
100191020
NCBI-ProteinID:
XP_018106049
Xenbase:
XB-GENE-983608
UniProt:
A0A974DDA8
A0A1L8GX95
LinkDB
All DBs
Position
3L:36055477..36195889
Genome browser
AA seq
1237 aa
AA seq
DB search
MQSRESGRGDGWGKSLGSGVCCRQDRSHSLKLTMKRTATACFLWLFFQLPILGSSTKVAY
RVPEEQPPNILIGSLASDYGYPDSKHLYKLELGHPYLRVDGKTGDIYTTETSIDRESLRE
CQNLEPGQKCFLEFEVSMTDLMSPVPRLLDGQIEILDINDNTPNFNSPVITLSIPENTMV
GMLFPIPAATDRDSGVNGVSSYELIVGPEAQDLFGLQVAEDQDEKQPQLIVMGKLDREQR
DSYDLTIKVQDGGTPARASSALLRISILDTNDNAPKFEKLAYEAELPENSPMGHSVLQVK
ANDSDQGVNAEIDYSFHQASDTVRRLLHLDRSTGLITVQGPIDREDVGTLKFSVIAKDKG
ANPKIARTQVTITIRDTNDNRPVIEIRGFGLVTHQGGVANISEDVPVETPVALVQVSDID
EGVNAAVTCVVAGDVPFQLKQVSDTGTDSKKKYFLQTTTSLDYESVKEYTIEIVAVDSGN
PPLSSTNSLKVQVTDVNDNAPVFSQSLMEVVFPENNDINDLVMEVSATDADSGSNAQLHY
SILPDPSARGVFSINPDSGQIRVNMVLDREQREHYDFHVVAVDKGIPSLKGTASVVITVL
DRNDNDPKFMLNGYNFSVMENMPRLSPVGMVTVIDADKGENAHIHLSVEPESGEFVIQNG
TGTILSSISFDREHQSTYTFRLKAVDGGDPPRSSYVGVTINVLDENDNAPVIVVPSNISY
KYLTPETHPGTQVNWVRAEDMDTGVNAELEYSIASGNPFQLFQISPNNGEVTLEKTIIRK
HYGLHRLVVRVNDKGKPSRHGTALVHFYINETLTNQTFVETLLGHSQDTPLDIDIAGDPE
YERSKQRSNIIFGVIAGIVAVILVIVVVVVARYCRQKEAKSGYQAGKKETKDLYAPKQGN
KNNKIKNKVKKSKSPKPPKPVEEDEETGLQKSLKFNLMSDSVGDSPRIHLPLNYPPGSPD
LGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSDQYSDYSYRT
NTQKYNHKQLPHRRVTFSTSNQAPDIQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLAL
PEDHYERTTPDGSIGEMEHPETDLRPLPDVAMTGNCTRECTEYGHSDTCWMPGQPSPNRR
PKNALKLSTFVPYQDKGSQEQIGNGNPRIPEERIGGNNNSTTKMANIQLLPTYSAFTSNS
HESCTDSPMEEIPLTQAADFQHATTPSSQSAKREIYL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atgcagagccgggagagcggcaggggagacggctggggaaaatcgcttggaagcggcgtc
tgctgccgccaagaccggtcacactcgctgaagttaacaatgaagaggacagcaactgct
tgcttcttatggcttttcttccaacttcccatacttggatcttccaccaaggtggcatac
agggtgccagaagagcagccacctaacattttgattggtagcttagcttcggactatggc
taccctgactccaaacacctgtacaaattagagctgggacacccttatctgcgtgtggat
ggtaagactggcgacatctacacaacagagacttccattgacagagagagcctgcgggag
tgccaaaaccttgaaccggggcagaagtgctttttggagtttgaagtgtccatgacagac
ctaatgtccccagttcccaggcttcttgatgggcaaattgagatcttggacataaatgac
aacacgcctaactttaattccccagtcatcactctgtctattccagaaaacaccatggtc
ggcatgcttttccccatccctgctgctacagatcgggactctggagtgaatggcgtgtct
tcatatgagctgattgtggggcctgaagctcaagaccttttcgggctgcaagtggctgag
gaccaagatgaaaaacaacctcagctcatagtcatggggaaattagatcgtgagcagcgg
gactcctatgacctcactataaaggtgcaagatggtggtaccccagcaagggccagtagc
gctctgttgcgcatttccatccttgatacaaacgataatgcccccaagtttgagaagttg
gcttatgaagcagagttgcctgagaacagcccaatgggacactctgtgctccaggttaaa
gccaatgattctgaccaaggcgttaatgcagagattgattactccttccaccaagcctct
gatacagtccggcggcttctacatttagatagatcgacgggtctgataaccgtccagggt
cctattgacagagaagatgtaggtactttgaaattctccgtgattgcaaaggataaagga
gccaatcccaaaattgcccgcacccaggtgaccattacaattcgagacactaatgacaac
agaccagtcatagaaattagaggatttggtcttgttacacaccaaggtggagtagctaac
atttctgaagatgttccagtggagacaccggtggctttggtgcaggtctctgatatagac
gagggggtaaatgctgctgtgacttgtgtggtggctggagatgttccattccaactgaaa
caggttagcgacacaggcaccgatagcaagaaaaaatatttcctgcaaaccaccacgtca
ctggactatgaatctgtgaaagagtacacaattgaaatcgtggctgttgactctgggaac
cctcccctttccagcacaaattcacttaaggttcaagtgacggatgtgaatgacaatgca
cctgtctttagtcaaagcttgatggaggtggtatttcctgaaaacaatgatattaatgat
ctagtgatggaagtaagtgcaactgatgcagacagtggttccaacgctcagcttcattac
tccattctgcccgacccatctgctaggggcgttttttcaataaacccagactctggtcag
attcgagtcaacatggtattggatcgggaacagcgggaacattatgattttcatgtagtt
gctgtagataagggaatcccaagtctaaaaggaacagcctctgttgtcatcactgtactg
gaccgtaatgataatgaccccaagtttatgcttaatggctacaatttctcagtaatggag
aatatgccacgattgagccctgtgggcatggtaactgtcattgatgcagataaaggggaa
aatgctcatattcatctttctgtggaaccggagagtggagagtttgtcatccagaatggg
accgggactatcctctccagcatctcctttgaccgggagcatcagagcacctacaccttc
cggttgaaggcggtggacggaggggacccgccccgttcctcctatgtcggagtgacaata
aatgtacttgatgaaaatgataatgccccagtaattgttgttccatctaacatttcctac
aagtatctcacccctgagacgcatccaggtacacaggtcaattgggtgcgagcagaagac
atggatacaggtgtaaatgcagaacttgagtacagcatcgctagtggtaatccctttcaa
ctttttcagatctctcctaataatggcgaagtaaccctggaaaaaacgataataaggaag
cattatggcctccatcgcctagttgtaagagtaaatgataaagggaagccttccagacat
ggcacagccttagttcacttctatatcaatgagaccttgacaaatcagacttttgtggag
actttacttggccacagccaggacaccccattagacatagacattgcaggagacccagag
tatgagcgaagcaaacaacggagcaacataatatttggtgtgattgctggtattgtggct
gttattttagtcattgtggtagtggttgtggcacggtattgcaggcaaaaagaagccaag
agtggctatcaagctggaaaaaaggagaccaaggacttgtatgctcctaagcaaggcaat
aaaaacaacaaaatcaaaaacaaagtcaagaagagcaagtctcctaagccacccaagcca
gtagaagaagatgaggaaactggtttgcagaagtcccttaaattcaacttgatgagtgac
tctgttggagacagcccacgtattcaccttcctttgaattacccgccgggcagcccagac
ttgggccgtcactatcgttccaactcccctctgccatccattcagttgcaaccgcaatcc
ccatctgcctccaagaagcaccaggtggtgcaggatcttccagccactaacacttttgtt
ggaactggggacaacaattccactggctctgatcagtactcggattacagctaccggacc
aacacccagaaatacaaccacaagcagttacctcatcgccgagtgacgttctcaacgtcc
aatcaggcacctgatattcaagacccatctcagcacagttactatgacagtgggctggag
gagtctgagacccctagcagcaagtcctcatccgggccaagaatagggccattagcactc
ccagaggaccattacgagcgtaccacccctgatggtagcattggtgagatggagcatcct
gaaactgatctccgaccactgcctgatgtagccatgacaggaaactgcacgcgggaatgc
acagaatatggacactcagatacatgctggatgcctggccagccttcccccaaccgcagg
cccaaaaatgccctcaagctctccacttttgtgccttaccaagacaaggggagtcaagag
caaattggcaacgggaaccccagaattccagaggagcgcattggaggcaacaacaacagc
accaccaaaatggctaacatccagctgttaccgacttacagtgcctttacaagtaacagc
catgaatcatgtacggactccccaatggaggaaatcccactcacccaagccgctgacttc
cagcatgccacaactccttcctctcaatctgccaagagggaaatatacctgtga
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integrated database retrieval system
